HAU3205, HAU3205 (genetic_marker) gossypium spp

Marker Overview
NameHAU3205
Genbank IDGR716890
TypeSSR
SpeciesGossypium spp.
Source SequenceGR707405.1
Source TypeEST
Repeat Motif(TCATAC)3
PCR ConditionAnnealing temperature: 54.8
Primer 1HAU3205_F: GCTCAGGGCGATGCCGATAG
Primer 2HAU3205_R: TCGAAAAGTATAGCTCAAAGCCA
Product Length341
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGR716890
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:67801958..67802284 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A11chromosomeA11:109088756..109089093 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018225.1chromosomeCM018225.1:64411257..64411583 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018212.1chromosomeCM018212.1:111002342..111002679 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:6048498..6048835 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_11chromosomeD10_11:63633271..63633671 +Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold480.1supercontigscaffold480.1:840583..840909 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:61608080..61608406 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A11chromosomeA11:88003843..88004180 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:67401219..67401545 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:118012795..118013132 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:66287655..66287981 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:116398441..116398778 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:67325132..67325458 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:114227710..114228047 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:110959548..110959885 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D11chromosomeD11:63833969..63834295 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold8382supercontigscaffold8382:226325..226662 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold20622supercontigscaffold20622:71466..71792 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D11chromosomeGbar_D11:64071580..64071906 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:107980485..107980822 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:66874945..66875271 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A11chromosomeA11:111259231..111259568 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:66223335..66223661 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017620.1chromosomeCM017620.1:111611063..111611387 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:68266272..68266596 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017646.1chromosomeCM017646.1:122674727..122675064 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:63902675..63903001 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017698.1chromosomeCM017698.1:111296636..111296973 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:67295061..67295387 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A11chromosomeA11:120263542..120263879 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:125277006..125277343 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_11chromosomeB_11:96396626..96396952 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:64967866..64968256 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr07chromosomeChr07:66347485..66347885 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:41227158..41227558 +Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:34607175..34607573 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr07chromosomeChr07:43425507..43425908 +Gossypium lobatum (D7) genome ISU_v1n/a
E11chromosomeE11:109267227..109267557 +Gossypium stocksii (E1) genome NSF_v1n/a
F11chromosomeF11:94625807..94626136 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr11chromosomeChr11:8623662..8623993 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
GR707405.1GR707405.1Gossypium spp.sequence_feature


Sequence
>HAU3205 ID=HAU3205; Name=HAU3205; organism=Gossypium spp.; type=genetic_marker; length=341bp
GCTCAGGGCGATGCCGATAGCGCTCTTGACAGGCTTTGGCAGAAGAAGAA
AGCCGAAGTCAAACAGCAGTAGTCGGATACCTTTTTATTACCGGTCTCTG
AACTCGGGAGGGAAAATTCTTGGCAATGACTGTTAAATTCAAGTTTGTTT
AGGTAGATAAAGTTGAAAGTTGTTTTTGTCGAATTGTTGATGTTTAGTCT
TTTGCATTCGATATATAGACACACACATACATACCAATGTCATACTCATA
CTCATACTTAGTTTTTGATACTGACATCTAAATCTATGGTGATATTTTTA
TGCTTTAGAATAAGCTTTTGGCTTTGAGCTATACTTTTCGA