HAU3203, HAU3203 (genetic_marker) gossypium spp

Marker Overview
NameHAU3203
Genbank IDGR716890
TypeSSR
SpeciesGossypium spp.
Source SequenceGR707283.1
Source TypeEST
Repeat Motif(GGT)5
PCR ConditionAnnealing temperature: 57.1
Primer 1HAU3203_F: TGCCGAAGCTTGCCGATGAT
Primer 2HAU3203_R: GCCTCATCACCGCCACTACC
Product Length340
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGR716890
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D07chromosomeD07:9813333..9813671 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A07chromosomeA07:10823507..10823849 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018221.1chromosomeCM018221.1:9277286..9277625 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018208.1chromosomeCM018208.1:11139946..11140288 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:9332561..9332897 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:11349108..11349452 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_07chromosomeD10_07:44775339..44775696 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016620.1chromosomeCM016620.1:101278222..101278558 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold1609.1supercontigscaffold1609.1:223043..223385 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr1chromosomeDt_chr1:44466197..44466536 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A07chromosomeA07:10122664..10123006 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold4175_D07supercontigscaffold4175_D07:114654..114993 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:9686496..9686835 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A07chromosomeGhir_A07:11112298..11112639 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:9285422..9285761 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:10556739..10557081 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:11078021..11078363 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:9514019..9514358 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A07chromosomeA07:10993617..10993959 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At07chromosomeAt07:11293285..11293627 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold8369supercontigscaffold8369:277926..278268 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold6259supercontigscaffold6259:3559..3898 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D07chromosomeGbar_D07:9681898..9682237 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A07chromosomeGbar_A07:11148564..11148906 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:9456921..9457260 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A07chromosomeA07:10916286..10916628 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:9772536..9772875 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017616.1chromosomeCM017616.1:10957898..10958240 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:9826231..9826570 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017642.1chromosomeCM017642.1:11182299..11182641 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:9613122..9613461 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017694.1chromosomeCM017694.1:11060178..11060523 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:9790119..9790457 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A07chromosomeA07:11231940..11232282 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:11495222..11495567 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:11542362..11542707 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr07chromosomeChr07:44249434..44249770 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_07chromosomeB_07:11341795..11342125 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr01chromosomeChr01:9560190..9560523 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr01chromosomechr01:8564502..8564964 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_01chromosomeChr_01:8605016..8605344 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:9410190..9410535 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:6477316..6477661 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr01chromosomeChr01:7947375..7947720 +Gossypium lobatum (D7) genome ISU_v1n/a
E07chromosomeE07:80284896..80285244 -Gossypium stocksii (E1) genome NSF_v1n/a
F07chromosomeF07:10440126..10440468 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr07chromosomeChr07:17731099..17731438 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr9chromosomeHAU3203:1..721 .
Chr9:39546203..39546889 -		n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
GR707283.1GR707283.1Gossypium spp.sequence_feature


Sequence
>HAU3203 ID=HAU3203; Name=HAU3203; organism=Gossypium spp.; type=genetic_marker; length=340bp
TGCCGAAGCTTGCCGATGATGAAGTTCATAACGCGCCGAGGAGGGTGCGG
TCAGGGGGGATTCATATGAGTGCTAAAGATAGGTTAGAGTGTTTGATGTT
GTCGAGAAGGACGGTGTCGGACCTTTCTATGGTTCGACCGTCGTCGACGA
GCATGGTGCCCGATGGGGTTCGACTAGGTGGTGGTGGTGGTACTTCCGGT
GGGGGGATGATGACTGTGAAAATGAGGTTGCCTAAGTCTCAAATGGCTAA
GTTGATGGAAGAGAGCAAAGATGGTGTTGAGGTAGCTGAGAAGATCCTTG
ATCTTTTTACCGGAAATGGTGGTAGTGGCGGTGATGAGGC