HAU3073, HAU3073 (genetic_marker) gossypium spp

Marker Overview
NameHAU3073
Genbank IDES843728
TypeSSR
SpeciesGossypium spp.
Source SequenceES843728.1
Source TypeEST
Repeat Motif(AT)14
PCR ConditionAnnealing temperature: 56.0
Primer 1HAU3073_F: TGCGGCCGTAATTCAGGCAA
Primer 2HAU3073_R: AGGCATTGTTCCCAAGAGCC
Product Length323
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankES843728
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:17722006..17722326 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A11chromosomeA11:20403367..20403666 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018212.1chromosomeCM018212.1:19774881..19775180 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:49411433..49411739 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_11chromosomeD5_11:49416892..49417204 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_11chromosomeD5_11:49445886..49446194 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:103163708..103164013 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:103171731..103172028 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_11chromosomeD10_11:16128785..16129087 +Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_11chromosomeD10_11:16123218..16123525 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016624.1chromosomeCM016624.1:26591194..26591493 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr7chromosomeDt_chr7:14551881..14552205 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr7chromosomeAt_chr7:2257355..2257654 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr6chromosomeDt_chr6:26018890..26019189 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:17049981..17050290 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A11chromosomeA11:20121048..20121347 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:17276966..17277284 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:20560219..20560518 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:16845707..16846029 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:19877141..19877440 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:17285729..17286053 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:20281767..20282066 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:17070825..17071147 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A11chromosomeA11:20706349..20706648 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold668supercontigscaffold668:35461..35760 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A11chromosomeGbar_A11:19575739..19576038 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A11chromosomeA11:19793217..19793516 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:16770899..16771205 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:17205657..17205965 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017646.1chromosomeCM017646.1:20353514..20353813 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:16898679..16898985 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017698.1chromosomeCM017698.1:20060130..20060429 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:17644833..17645155 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A11chromosomeA11:20876535..20876834 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:21247389..21247709 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:21252929..21253234 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:21107843..21108148 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr11chromosomeChr11:21099826..21100123 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Contig00104chromosomeContig00104:18566..18873 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr11chromosomeChr11:47330530..47330836 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr11chromosomeChr11:47364763..47365071 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_11chromosomeB_11:19359200..19359526 +Gossypium anomalum (B1) genome NSF_v1n/a
B_11chromosomeB_11:19350308..19350607 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr_07chromosomeChr_07:14325210..14325512 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr_07chromosomeChr_07:14319477..14319784 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:16790949..16791250 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:11430653..11430954 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr07chromosomeChr07:13426974..13427430 +Gossypium lobatum (D7) genome ISU_v1n/a
E11chromosomeE11:21955426..21955730 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr07chromosomeHAU3073:1..637 .
Chr07:16274744..16275364 +		n/a
Chr7chromosomeHAU3073:1..637 .
Chr7:35821189..35821809 +		n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
ES843728.1ES843728.1Gossypium spp.sequence_feature


Sequence
>HAU3073 ID=HAU3073; Name=HAU3073; organism=Gossypium spp.; type=genetic_marker; length=323bp
TGCGGCCGTAATTCAGGCAAGTCTTGCGAACCTGCTAGGAATACAGGCAC
AAAGGTACCTCCAAATTGTAGTTCACTATACAACAAAGATTGCCACTGAT
TTACTACTTTTTCTTGCTATGCTGGTATATTGTGTTTCAATTTATCAAGA
TATATATATATATATATATATATATATAAATAAGGATGATGGAGAAACAT
CTCTTTCAATATATGCATAAATATTTCTGGTTTCATTAATCTCTTTTCAT
AATTTGTAGTATATGTGACAAGCAGCAGTACTCTCATCAAATTCTCATGT
ATAGGCTCTTGGGAACAATGCCT