HAU3035, HAU3035 (genetic_marker) gossypium spp

Marker Overview
NameHAU3035
Genbank IDES800837
TypeSSR
SpeciesGossypium spp.
Source SequenceES800837.1
Source TypeEST
Repeat Motif(GATGAA)3
PCR ConditionAnnealing temperature: 56.7
Primer 1HAU3035_F: GTCTGACTCCAAGCTTCCACAGT
Primer 2HAU3035_R: ATTCCACTGTCCGACGCCAC
Product Length281
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankES800837
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D13chromosomeD13:58393854..58394121 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A13chromosomeA13:97969927..97970206 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018227.1chromosomeCM018227.1:54119372..54119639 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018214.1chromosomeCM018214.1:101997876..101998149 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:53182789..53183056 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_13chromosomeKI_13:38702298..38702562 -Gossypioides kirkii genome ISU_v3n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:117192481..117192754 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_13chromosomeD10_13:55035731..55035998 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:150521834..150522101 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr13chromosomeAt_chr13:23743551..23743830 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr6chromosomeAt_chr6:2694632..2694899 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:54293526..54293793 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A13chromosomeA13:74479759..74480038 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:57259715..57259982 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A13chromosomeGhir_A13:101840914..101841193 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:58191835..58192102 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:104087681..104087960 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:57408352..57408619 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:102305530..102305809 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:54129498..54129765 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A13chromosomeA13:100782325..100782604 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt13chromosomeDt13:55834219..55834486 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At13chromosomeAt13:81199409..81199682 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At13chromosomeAt13:81197393..81197660 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold14548supercontigscaffold14548:10452..10719 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold11332supercontigscaffold11332:82096..82369 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold11332supercontigscaffold11332:80080..80347 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D13chromosomeGbar_D13:53872889..53873156 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A13chromosomeGbar_A13:102950187..102950460 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:55107573..55107840 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A13chromosomeA13:106340868..106341141 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:54859668..54859935 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017622.1chromosomeCM017622.1:104011853..104012132 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:58056211..58056478 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017648.1chromosomeCM017648.1:108953267..108953540 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:54666549..54666816 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017700.1chromosomeCM017700.1:104026392..104026665 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:58487425..58487692 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A13chromosomeA13:105029394..105029673 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:111014144..111014417 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:115546890..115547163 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr13chromosomeChr13:53171870..53172137 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_13chromosomeB_13:8419544..8419811 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr13chromosomeChr13:54372749..54373016 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr13chromosomechr13:39920229..39920498 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_13chromosomeChr_13:38286525..38286792 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:57248344..57248611 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13_325518chromosomeChr13_325518:1326..1593 -Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:28968990..28969254 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr13chromosomeChr13:36205646..36206038 -Gossypium lobatum (D7) genome ISU_v1n/a
E13chromosomeE13:107040066..107040336 -Gossypium stocksii (E1) genome NSF_v1n/a
F13chromosomeF13:89688213..89688486 -Gossypium longicalyx (F1) genome NSF_v1n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
ES800837.1ES800837.1Gossypium spp.sequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch13_At.13N/A61.27HAU3035View
Sequence
>HAU3035 ID=HAU3035; Name=HAU3035; organism=Gossypium spp.; type=genetic_marker; length=281bp
GTCTGACTCCAAGCTTCCACAGTAACTGAAACATGGAGAATGAAAGGAAG
AAGAGAAAAATGGGGAATGAAGAGGAAAAAGACGATGAAGATGAAGATGA
AGATGATGATGAAGAAGAGAAAGTGGAGAAGTTCTTTGCTTTGATAAGGA
GCACAAGGGAGATGCGTGATCGTCTAAGAAACGCGGCGGTGCCTAATGGA
CCAAAAGAGGAAGAATATCAGAAGAAGAAACAGGAAGATAAGGCGGTTGT
TGTTGGTGGTGGTGGCGTCGGACAGTGGAAT