HAU3015, HAU3015 (genetic_marker) gossypium spp

Marker Overview
NameHAU3015
Genbank IDES819529
TypeSSR
SpeciesGossypium spp.
Source SequenceES819529.1
Source TypeEST
Repeat Motif(GAGTTG)4
PCR ConditionAnnealing temperature: 56.8
Primer 1HAU3015_F: GGCACGAGGGAAGGGGAAAA
Primer 2HAU3015_R: CGCCGAGGGATCCGATCAAG
Product Length317
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankES819529
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D03chromosomeD03:49022527..49023063 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018217.1chromosomeCM018217.1:49301560..49302096 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D10_02chromosomeD10_02:47242676..47243217 -Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold154.1supercontigscaffold154.1:1577607..1578143 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold59231supercontigscaffold59231:166..702 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D03chromosomeD03:42853282..42853818 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D03chromosomeGhir_D03:48828421..48828957 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D03chromosomeD03:50138495..50139031 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D03chromosomeD03:49807663..49808199 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D03chromosomeD03:49084933..49085479 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D03chromosomeGbar_D03:47697913..47698449 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D03chromosomeD03:50089921..50090457 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017625.1chromosomeCM017625.1:48515417..48515952 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017651.1chromosomeCM017651.1:52697592..52698134 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017703.1chromosomeCM017703.1:50168982..50169518 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D03chromosomeD03:51081101..51081637 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
chr03chromosomechr03:31653955..31654500 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_03chromosomeChr_03:27163426..27163975 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr03chromosomeChr03:48514219..48514767 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr03chromosomeChr03:27416780..27417320 -Gossypium aridum (D4) genome ISU_v1n/a
Chr03chromosomeChr03:23390756..23391290 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr03chromosomeChr03:29231247..29231786 -Gossypium lobatum (D7) genome ISU_v1n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
ES819529.1ES819529.1Gossypium spp.sequence_feature


Sequence
>HAU3015 ID=HAU3015; Name=HAU3015; organism=Gossypium spp.; type=genetic_marker; length=317bp
GGCACGAGGGAAGGGGAAAAGTTTGTTTGAGAAAAGAGCAAATAAAAAGG
AGAGAAGACAAGAGTCCGGCCTAAGCCAAATACACAGAAAGGAAAGAAAC
AGAAGAGTTGGAGTTGGAGTTGGAGTTGGTTATGATTAGATTGCTTTGAA
GAAGCAATCAAAATTGGATGAACCGCAGCAGATGATGGTTTGTTTTTGCT
CTCAGAATGTGAGAGATGGAATTCACGCTTGTCTTCGCGATTATGATAGG
CTCCAGAATCTGGCCGTCGTCCTTATTTACATCCAAATCGGGTGCTCCTT
GATCGGATCCCTCGGCG