HAU3008, HAU3008 (genetic_marker) gossypium spp

Marker Overview
NameHAU3008
Genbank IDES829110
TypeSSR
SpeciesGossypium spp.
Source SequenceES829110.1
Source TypeEST
Repeat Motif(CTATGG)4
PCR ConditionAnnealing temperature: 55.5
Primer 1HAU3008_F: CGTGGTGATGGTGCGTGGTA
Primer 2HAU3008_R: GCCCTCTATTATTGGGCCATGA
Product Length145
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankES829110
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D12chromosomeD12:42969675..42969815 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018226.1chromosomeCM018226.1:39923602..39923742 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:19579681..19579821 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_12chromosomeD10_12:34816363..34816491 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr8chromosomeDt_chr8:35144967..35145107 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:39219555..39219695 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:42354699..42354839 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A12chromosomeGhir_A12:81563566..81563694 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:41541626..41541766 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:42275610..42275750 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:40089606..40089746 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold7182supercontigscaffold7182:114825..114965 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D12chromosomeGbar_D12:39170396..39170536 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:40466423..40466551 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:40352682..40352822 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:42702866..42703120 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:40998738..40998878 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:42230104..42230244 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:82653417..82653551 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:38188982..38189122 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_12chromosomeB_12:63361182..63361334 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr08chromosomeChr08:38489427..38489555 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr08chromosomechr08:29396684..29396812 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_08chromosomeChr_08:27058887..27059015 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:39442003..39442131 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:25853310..25853548 -Gossypium lobatum (D7) genome ISU_v1n/a
E12chromosomeE12:85926060..85926200 -Gossypium stocksii (E1) genome NSF_v1n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
ES829110.1ES829110.1Gossypium spp.sequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch26_Dt.12N/A106HAU3008View
Sequence
>HAU3008 ID=HAU3008; Name=HAU3008; organism=Gossypium spp.; type=genetic_marker; length=145bp
CGTGGTGATGGTGCGTGGTAACACTCACACCCATGACTATGATCACTATG
GCTATGGCTATGGCTATGGCTATGACTATGACCATGACCGTGATCATGGC
CATGAACGTGACCATGACTATGATCATGGCCCAATAATAGAGGGC