HAU2879, HAU2879 (genetic_marker) gossypium spp

Marker Overview
NameHAU2879
Genbank IDES811560
TypeSSR
SpeciesGossypium spp.
Source SequenceES811560.1
Source TypeEST
Repeat Motif(AAG)6
PCR ConditionAnnealing temperature: 52.8
Primer 1HAU2879_F: GGCACGAGAGAAGAAGAAGA
Primer 2HAU2879_R: CAACGGCAATAGCCTCCTCA
Product Length350
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankES811560
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D13chromosomeD13:264826..265166 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D13chromosomeD13:265417..265852 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018227.1chromosomeCM018227.1:319484..319834 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:207397..207756 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_13chromosomeD5_13:207100..207450 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:254838..255701 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_13chromosomeD10_13:222539..222895 -Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold1263.1supercontigscaffold1263.1:290898..291701 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:226506..226847 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:223986..224327 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D13chromosomeGhir_D13:224580..224921 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:226711..227052 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:231044..231385 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:231638..231979 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:239188..239529 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold20501supercontigscaffold20501:335811..336662 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold20501supercontigscaffold20501:336195..336560 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D13chromosomeGbar_D13:68038..68388 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
CM017635.1chromosomeCM017635.1:218161..218502 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:295139..295486 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:222452..222802 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017713.1chromosomeCM017713.1:222050..222898 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:271090..271430 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D13chromosomeD13:271682..272022 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:241114..241977 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr13chromosomeChr13:203485..203844 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
E13chromosomeE13:346240..346689 -Gossypium stocksii (E1) genome NSF_v1n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
ES811560.1ES811560.1Gossypium spp.sequence_feature


Sequence
>HAU2879 ID=HAU2879; Name=HAU2879; organism=Gossypium spp.; type=genetic_marker; length=350bp
GGCACGAGAGAAGAAGAAGAAGAGCAATGAAAATGAGGATGCTATTGAGG
CTATTGCTGTTGTTGATGGTGCAATTGATGTAGGGAGTGATGAAATTGAA
AAGAAGAAAAAGAAGAAGAGCAATGAAAATGAGGATGCTATTGAGGCTAT
TGCTGTTGTTGATGGTGCAATTGGTGTAGGGAGTGATGAAATTGAAAAGA
AGAAGAAGAACAAAGAGAATGACGAGGCTATTGAGGCTATTGCTGTTGCT
GTTGTTGATAGTGCAATTGATGCAGGGAGTGATGAAATTGAAAAGAAGAA
AAAGAAGAAGAAGAAGAAGAACAAAGAGAATGAGGAGGCTATTGCCGTTG