HAU2819, HAU2819 (genetic_marker) gossypium spp

Marker Overview
NameHAU2819
Genbank IDES824477
TypeSSR
SpeciesGossypium spp.
Source SequenceES824477.1
Source TypeEST
Repeat Motif(GTTTTT)3
PCR ConditionAnnealing temperature: 56.7
Primer 1HAU2819_F: TGCCCTCCTCTGATCAAAGTCCT
Primer 2HAU2819_R: AGCCACTGCAGCCATGGAAT
Product Length347
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankES824477
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D13chromosomeD13:8041232..8041576 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D10chromosomeD10:17729905..17730251 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018227.1chromosomeCM018227.1:7470547..7470891 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018224.1chromosomeCM018224.1:16451577..16451924 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:7223802..7224146 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_10chromosomeD10_10:48029758..48030120 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr13chromosomeDt_chr13:50633215..50633559 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr11chromosomeDt_chr11:14641383..14641729 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:7580727..7581071 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D10chromosomeD10:16488054..16488400 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:7610943..7611287 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D10chromosomeGhir_D10:16880940..16881286 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:7413875..7414219 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:16480946..16481292 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:7833819..7834163 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:17076263..17076609 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:7492879..7493223 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D10chromosomeD10:17029927..17030273 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt13chromosomeDt13:7850609..7850953 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold5203supercontigscaffold5203:1001..1345 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold15462supercontigscaffold15462:57171..57518 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D13chromosomeGbar_D13:7226621..7226965 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D10chromosomeGbar_D10:16275004..16275351 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:7178463..7178807 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D10chromosomeD10:16802421..16802768 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:7454356..7454700 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017632.1chromosomeCM017632.1:16685580..16685927 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:7907772..7908116 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017658.1chromosomeCM017658.1:16956957..16957304 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:7455937..7456281 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017710.1chromosomeCM017710.1:16816615..16816962 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:8001575..8001919 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D10chromosomeD10:17167742..17168088 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:7139026..7139371 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr10chromosomeChr10:16299020..16299365 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr11chromosomeChr11:16372177..16372523 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr11chromosomeChr11:16742061..16742406 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
ES824477.1ES824477.1Gossypium spp.sequence_feature


Sequence
>HAU2819 ID=HAU2819; Name=HAU2819; organism=Gossypium spp.; type=genetic_marker; length=347bp
TGCCCTCCTCTGATCAAAGTCCTAATTCTTATCCTTTGTTAAATGATCTT
GTGATAATTTTATTTATTTATTTAAGGAAATCCAATATGCATTTTCACTT
TATTTCCATTCTAGACAATTTTTTTTATTTGTTTGCTCAAATGGGTATCT
ATTATTAGGCATAAAAAAGTTTTTGTTTTTGTTTTTTAATTTTTTCTGTA
AAGCTATTAATTTTCTTGCTCTTTCTAAATACAAGAGAACAAATTCACAA
AAGTAAATTCCCATTTTCGTTTGATCATTTGGGTATTTTTCGTTTCATCA
TTTGGGTATCTATTATTAGGGGTTTTGATTCCATGGCTGCAGTGGCT