HAU2866, HAU2866 (genetic_marker) gossypium spp

Marker Overview
NameHAU2866
Genbank IDES795661
TypeSSR
SpeciesGossypium spp.
Source SequenceES795661.1
Source TypeEST
Repeat Motif(AAG)7
PCR ConditionAnnealing temperature: 55.3
Primer 1HAU2866_F: AGACAATGTGGCAGTCAGGGT
Primer 2HAU2866_R: TGCAGCATGCACAAAAGCTG
Product Length233
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankES795661
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A04chromosomeA04:2937510..2937742 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A04chromosomeA04:2862980..2863202 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018205.1chromosomeCM018205.1:3092964..3093188 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018205.1chromosomeCM018205.1:3035788..3036010 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:96884686..96884911 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:96880814..96881036 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016618.1chromosomeCM016618.1:4010908..4011136 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr9chromosomeDt_chr9:492888..493120 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr9chromosomeDt_chr9:442730..442952 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A04chromosomeA04:2896254..2896486 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A04chromosomeA04:2811436..2811658 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A04chromosomeGhir_A04:3586121..3586353 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A04chromosomeGhir_A04:3535049..3535271 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A04chromosomeA04:2848183..2848415 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:2800203..2800425 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:2895998..2896230 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:2844855..2845077 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:2857713..2857945 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A04chromosomeA04:2806557..2806779 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold12supercontigscaffold12:316353..316577 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold12supercontigscaffold12:243079..243301 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Scaffold1560supercontigScaffold1560:86032..86254 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A04chromosomeGbar_A04:3198272..3198496 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A04chromosomeA04:3036115..3036339 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A04chromosomeA04:2978832..2979054 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017613.1chromosomeCM017613.1:3192794..3193018 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017613.1chromosomeCM017613.1:3141539..3141761 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017639.1chromosomeCM017639.1:3708153..3708402 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017639.1chromosomeCM017639.1:3630979..3631201 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017691.1chromosomeCM017691.1:3253666..3253890 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017691.1chromosomeCM017691.1:3196485..3196707 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A04chromosomeA04:2928029..2928261 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A04chromosomeA04:2876873..2877095 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:90697746..90697975 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:94513134..94513359 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:94509261..94509483 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
F05chromosomeF05:73472588..73472819 +Gossypium longicalyx (F1) genome NSF_v1n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
ES795661.1ES795661.1Gossypium spp.sequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch04_At.04N/A29.2HAU2866View
Sequence
>HAU2866 ID=HAU2866; Name=HAU2866; organism=Gossypium spp.; type=genetic_marker; length=233bp
AGACAATGTGGCAGTCAGGGTAAGAAGAAGAAGAAGAAGAAGATAAGTTA
CATAACATTTTGAATAATTGGATTTCATTTTTGAAACCTAAATATTAACA
AAAATTCTTGTAAGTTAATATTATATATATCAAGACAAGCATGCTTCTAC
TTGTAAGCCAACTATGCTGCTATTATGTTTTTGTTGAAGTGCATACAGTC
TATTTACATGTTGCAGCTTTTGTGCATGCTGCA