HAU2648, HAU2648 (genetic_marker) gossypium spp

Marker Overview
NameHAU2648
Genbank IDES801209
TypeSSR
SpeciesGossypium spp.
Source SequenceES801209.1
Source TypeEST
Repeat Motif(AT)10
PCR ConditionAnnealing temperature: 53.7
Primer 1HAU2648_F: AACCCCAAAACAAAGCAAGA
Primer 2HAU2648_R: GACTGGTCCCAGCTTCCAGC
Product Length267
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankES801209
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A10chromosomeA10:96492438..96492705 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018211.1chromosomeCM018211.1:94054574..94054835 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:21302467..21302748 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr11chromosomeAt_chr11:8585873..8586140 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A10chromosomeA10:85993374..85993641 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:99820736..99821001 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:100818633..100818900 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:99952957..99953224 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:95035381..95035648 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At10chromosomeAt10:90543199..90543460 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At10chromosomeAt10:90536751..90537012 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1294supercontigscaffold1294:212663..212924 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1294supercontigscaffold1294:206215..206476 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A10chromosomeGbar_A10:94376619..94376880 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:96007302..96007563 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:95707527..95707792 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017645.1chromosomeCM017645.1:103284105..103284364 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017697.1chromosomeCM017697.1:97433184..97433447 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:102976962..102977229 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:109551716..109551979 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:103814692..103814975 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr11chromosomeChr11:28329498..28329760 +Gossypium gossypioides (D6) genome ISU_v1n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
ES801209.1ES801209.1Gossypium spp.sequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1GX1135 x VGX100-2, RIL (2016)AD_ch23_Dt.09N/A328.3HAU2648View
2CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch10_At.10N/A65.5HAU2648View
Sequence
>HAU2648 ID=HAU2648; Name=HAU2648; organism=Gossypium spp.; type=genetic_marker; length=267bp
AACCCCAAAACAAAGCAAGAAATATATATATATATATATATAAAATAAAG
CAAGCAACTACATTTCTCAAGATGTCAACTTGTCAACAGAAAATTTAAGG
TAAGAGTAATATTATATATAAATAAATGGCACTTTTACCATTGATATAAC
ATCTACCTGCAAGTCCTATTGTACAATTTTGATTTTTAAGGCAAATGGCT
TAATTCTGGAGTACTCAATGTGGTCAATTGTTGCCAAGTGGATGGTTGCT
GGAAGCTGGGACCAGTC