HAU0865, HAU0865 (genetic_marker) gossypium spp

Marker Overview
NameHAU0865
Genbank IDCO130761
TypeSSR
SpeciesGossypium spp.
Source SequenceCO130761
Source TypeEST
Repeat Motif(CCT)5
PCR ConditionAnnealing temperature: 57.1
Primer 1HAU0865_F: GACTTCAACTTCCTTTGCTCA
Primer 2HAU0865_R: GGAGGAAGCAACAGCAGTAT
Product Length284
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO130761
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:61325646..61325929 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018225.1chromosomeCM018225.1:58630867..58631149 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:10141536..10141818 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_11chromosomeD10_11:57645802..57646085 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016624.1chromosomeCM016624.1:127833589..127833924 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold2494.1supercontigscaffold2494.1:199340..199623 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:56512559..56512842 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:61211710..61211993 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:60491990..60492273 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:61183062..61183345 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:58457677..58457960 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold17848supercontigscaffold17848:53320..53602 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D11chromosomeGbar_D11:58079807..58080089 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:61074878..61075161 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:60516220..60516503 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:62036043..62036326 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:58137104..58137386 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:61008386..61008669 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:8447179..8447462 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_11chromosomeB_11:87430729..87431063 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:58153619..58153899 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr07chromosomechr07:41972207..41972490 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_07chromosomeChr_07:39311435..39311718 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:59082150..59082433 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07_5962228chromosomeChr07_5962228:5839..6122 -Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:31194674..31194956 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr07_6258721chromosomeChr07_6258721:875..1158 -Gossypium lobatum (D7) genome ISU_v1n/a
Chr07chromosomeHAU0865:1..848 .
Chr07:50667431..50668534 +		n/a
Chr7chromosomeHAU0865:1..848 .
Chr7:7609189..7610292 -		n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
CO130761CO130761Gossypium spp.sequence_feature


Sequence
>HAU0865 ID=HAU0865; Name=HAU0865; organism=Gossypium spp.; type=genetic_marker; length=284bp
GACTTCAACTTCCTTTGCTCAGCCACCTCCTCCGCCTCCTAGGCCAACCC
ACGGCCGCCACCGAGCTGCCTCGTTTCCTTTTCAATATTTGCTCCAACCT
TCCACACCATCACTTAACTTTCAAAGTCTCTTTTATCTTAAAAAAGAAAA
GAAGTTGATTTTGGAAGAAACCCAATAAACGGAGAAAGAACCGGAAAATG
GAGATTACTGCCAGAGCTCCGGGGATGATTATTCTCGCCGGTGAACATGC
CGTGGTTCATGGATATACTGCTGTTGCTTCCTCC