HAU0858, HAU0858 (genetic_marker) gossypium spp

Marker Overview
NameHAU0858
Genbank IDCO128407
TypeSSR
SpeciesGossypium spp.
Source SequenceCO128407
Source TypeEST
Repeat Motif(ATT)9
PCR ConditionAnnealing temperature: 57.0
Primer 1HAU0858_F: CCTTATGGTGAACGATTTCC
Primer 2HAU0858_R: GGGAATGCAAAACAAAAATC
Product Length181
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO128407
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D01chromosomeD01:63262839..63263019 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018215.1chromosomeCM018215.1:61631227..61631407 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:55514617..55514797 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr9chromosomeDt_chr9:50300314..50300494 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:60350646..60350826 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:62062967..62063147 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:63509001..63509181 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:63494894..63495074 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:59962521..59962701 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt01chromosomeDt01:61720295..61720475 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold24414supercontigscaffold24414:163154..163334 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D01chromosomeGbar_D01:61801098..61801278 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:62485621..62485801 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:62829316..62829496 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:64330809..64330989 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:62284810..62284990 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:63975422..63975602 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:51301963..51302143 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr02chromosomeHAU0858:1..376 .
Chr02:61646517..61646892 +		n/a
Chr2chromosomeHAU0858:1..376 .
Chr2:1118329..1118704 -		n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
CO128407CO128407Gossypium spp.sequence_feature


Sequence
>HAU0858 ID=HAU0858; Name=HAU0858; organism=Gossypium spp.; type=genetic_marker; length=181bp
CCTTATGGTGAACGATTTCCGGAATCGTTTTTTGAATGAAGATGAAGGAA
AGGGGGCTTAACCCGAAAAACGAACAGATACGGGAAACAAGTATGTATAG
TGTGAACGGCAGCTGTATTTTTGCCAATTCATTTCATTATTATTATTACT
ATGATTATTATGATTTTTGTTTTGCATTCCC