HAU0826, HAU0826 (genetic_marker) gossypium spp

Marker Overview
NameHAU0826
Genbank IDCO117891
TypeSSR
SpeciesGossypium spp.
Source SequenceCO117891
Source TypeEST
Repeat Motif(TAG)5
PCR ConditionAnnealing temperature: 57.0
Primer 1HAU0826_F: ATGTGGGTCAGATCAGCAG
Primer 2HAU0826_R: TGGATCCTTGTCCTGAGAAT
Product Length247
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO117891
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D04chromosomeD04:40897546..40897874 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018218.1chromosomeCM018218.1:39344530..39344858 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_04chromosomeD5_04:14615427..14615754 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_2_4chromosomeKI_2_4:7605690..7606016 +Gossypioides kirkii genome ISU_v3n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:21353048..21353372 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr12chromosomeAt_chr12:15147231..15147565 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr12chromosomeDt_chr12:31541207..31541535 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D04chromosomeD04:36199395..36199723 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:40992162..40992490 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:42123174..42123502 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:41178744..41179072 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:38816909..38817237 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold2909supercontigscaffold2909:124805..125133 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D04chromosomeGbar_D04:37422281..37422609 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D04chromosomeD04:42605850..42606178 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:39794003..39794331 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:42458876..42459204 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017704.1chromosomeCM017704.1:39647348..39647676 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:42659312..42659640 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:77642594..77642917 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:14575622..14575950 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_02chromosomeB_02:19728784..19729115 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:46188749..46189176 -Gossypium aridum (D4) genome ISU_v1n/a
E04chromosomeE04:63515874..63516206 +Gossypium stocksii (E1) genome NSF_v1n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
CO117891CO117891Gossypium spp.sequence_feature


Sequence
>HAU0826 ID=HAU0826; Name=HAU0826; organism=Gossypium spp.; type=genetic_marker; length=247bp
ATGTGGGTCAGATCAGCAGCAGCAAGGCGGCTAGGTGCTGGGAACGGGAG
CCGCACGCTTGGATTTGCTGGGGGGAATGGTGGGAGTAAAAGTATTAGTA
GTACTAGTAGGATTGGGTCATTGTGGTGCTTCAAGTTCTAGTAATTCAAT
CACTAATATGAATTTTGATGGGAAAGGGACTTATTTAATCTTTAACGTTG
GTGATGCTATCTTTATAAGTGATTTGAATTCTCAGGACAAGGATCCA