HAU0824, HAU0824 (genetic_marker) gossypium spp

Marker Overview


Name	HAU0824
Genbank ID	CO117094
Type	SSR
Species	Gossypium spp.
Source Sequence	CO117094
Source Type	EST
Repeat Motif	(TCCA)4
PCR Condition	Annealing temperature: 56.9
Primer 1	HAU0824_F: GGAAGCTCATTGTGGAAACT
Primer 2	HAU0824_R: AATTCAGCAGCCTTTTCATC
Product Length	266
Publication	[view all]
Comment	Primer data obtained in 2012

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	CO117094

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
D5_01	chromosome	D5_01:49327979..49328246 -	Gossypium raimondii (D5) 'D5-4' genome NSF_v1	n/a
Chr01	chromosome	Chr01:44718262..44718529 -	Gossypium raimondii (D5) 'Grai D502' genome HAU_v1	n/a
Chr01	chromosome	Chr01:18260553..18260820 +	Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1	n/a

Publications


Year	Publication
2011	Yu Y, Yuan D, Liang S, Li X, Wang X, Lin Z, Zhang X. Genome structure of cotton revealed by a genome-wide SSR genetic map constructed from a BC1 population between gossypium hirsutum and G. barbadense. BMC genomics. 2011; 12:15

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
CO117094	CO117094	Gossypium spp.	sequence_feature

Sequence

>HAU0824 ID=HAU0824; Name=HAU0824; organism=Gossypium spp.; type=genetic_marker; length=266bp
GGAAGCTCATTGTGGAAACTTGAATACCCTTTCACTGAGGTAGGTATTTA
CATACATGTCACTCCATCCTCCATGTCCATCCATCATCCATCAACTTTCT
TTTTGCAGATCTACCAAGTGGACTTTGTAATCTTTTGTGTGGGACGGTTC
AGTGGTCTGCCAAACATACCAGAATTCCCCCCAAATAAGGGTCCGGAAGC
ATTTCATGGTAAGGTCATACATTCTATGGACTATGCAGCCATGGATGATG
AAAAGGCTGCTGAATT

Search form

HAU0824, HAU0824 (genetic_marker) gossypium spp