HAU0815, HAU0815 (genetic_marker) gossypium spp

Marker Overview
NameHAU0815
Genbank IDCO114547
TypeSSR
SpeciesGossypium spp.
Source SequenceCO114547
Source TypeEST
Repeat Motif(ATT)7
PCR ConditionAnnealing temperature: 56.6
Primer 1HAU0815_F: AAACCCCTTAGTGTGGTTGA
Primer 2HAU0815_R: TATTCATTTGGCCAATTCTG
Product Length294
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO114547
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D09chromosomeD09:52365459..52365752 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018223.1chromosomeCM018223.1:49517328..49517621 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:42695526..42695818 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_09chromosomeD10_09:1192482..1192779 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016622.1chromosomeCM016622.1:1497735..1498025 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold104.1supercontigscaffold104.1:1811168..1811461 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:49921421..49921714 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:51716020..51716313 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:50956631..50956924 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:51483842..51484135 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:49565722..49566015 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold2083supercontigscaffold2083:157672..157965 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D09chromosomeGbar_D09:50370145..50370438 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:52734316..52734609 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:50483186..50483479 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:51994707..51995000 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:51182113..51182406 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:53373105..53373398 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:48932496..48932788 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr06chromosomeChr06:49782287..49782567 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_06chromosomeChr_06:35021947..35022241 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:50871685..50871983 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:38810175..38810467 +Gossypium aridum (D4) genome ISU_v1n/a
Chr06chromosomeChr06:29462564..29462859 +Gossypium gossypioides (D6) genome ISU_v1n/a
F09chromosomeF09:69574491..69574765 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr09chromosomeChr09:131286811..131287101 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
CO114547CO114547Gossypium spp.sequence_feature


Sequence
>HAU0815 ID=HAU0815; Name=HAU0815; organism=Gossypium spp.; type=genetic_marker; length=294bp
AAACCCCTTAGTGTGGTTGATGAATTCGGGATCCGAAGGATTCCGATGGG
TCAACATAGTTTATACATTGGGGGTTTAAAGCATTTTATTTTTTTCCAAG
CAAATTTGGGGGGCATCAAGAATTAGAGTATAATTATTATTGTTATTATT
ATTAGTTCCCCTGCATTTCCAAAGGGAAAAAAAAGGGGTCATAATTGTAC
AAGTTTTTAGGCATTTGAGTTTTCAATTTATTTTGTTTTTGTTTTTTAAA
GAAAAGAACAAATATTGATTGAAACAGAATTGGCCAAATGAATA