HAU0814, HAU0814 (genetic_marker) gossypium spp

Marker Overview
NameHAU0814
Genbank IDCO114429
TypeSSR
SpeciesGossypium spp.
Source SequenceCO114429
Source TypeEST
Repeat Motif(TTA)9
PCR ConditionAnnealing temperature: 56.8
Primer 1HAU0814_F: GTGAACATCAAGTGCTACCG
Primer 2HAU0814_R: TAGGGTTTCTGGACCTTCTG
Product Length131
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO114429
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D12chromosomeD12:57658733..57658857 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018226.1chromosomeCM018226.1:54188906..54189030 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:5512045..5512175 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_12chromosomeKI_12:4535915..4536049 -Gossypioides kirkii genome ISU_v3n/a
D10_12chromosomeD10_12:49201189..49201331 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr8chromosomeDt_chr8:49150566..49150690 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:54151977..54152101 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:56587959..56588083 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:55876766..55876890 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:56667457..56667581 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:54838199..54838323 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold44803supercontigscaffold44803:821..945 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D12chromosomeGbar_D12:53198191..53198315 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:54988576..54988700 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:54902131..54902255 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017712.1chromosomeCM017712.1:55519871..55519995 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:57057438..57057562 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:52227206..52227336 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr08chromosomeChr08:52555521..52555654 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_08chromosomeChr_08:38888634..38888773 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:54190017..54190144 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:37807665..37807795 +Gossypium aridum (D4) genome ISU_v1n/a
Chr08chromosomeChr08:29463540..29463667 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr08chromosomeChr08:36197887..36198026 +Gossypium lobatum (D7) genome ISU_v1n/a
E12chromosomeE12:107690046..107690191 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr08chromosomeHAU0814:1..597 .
Chr08:51637294..51638511 +		n/a
Chr8chromosomeHAU0814:1..597 .
Chr8:12232020..12233237 -		n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
CO114429CO114429Gossypium spp.sequence_feature


Sequence
>HAU0814 ID=HAU0814; Name=HAU0814; organism=Gossypium spp.; type=genetic_marker; length=131bp
GTGAACATCAAGTGCTACCGATTTGGAAATAAAATCGGTTTTGTATTTCC
AATAGCAGAATGTTGATTTTCAGCTCTGGGGGTTATTATTATTATTATTA
TTATTATTATCCAGAAGGTCCAGAAACCCTA