HAU0812, HAU0812 (genetic_marker) gossypium spp

Marker Overview
NameHAU0812
Genbank IDCO114237
TypeSSR
SpeciesGossypium spp.
Source SequenceCO114237
Source TypeEST
Repeat Motif(TTG)5
PCR ConditionAnnealing temperature: 57.1
Primer 1HAU0812_F: TGGTAGCCCATTTTGACTTT
Primer 2HAU0812_R: TAACAATGGGGGTTCAAGTT
Product Length157
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO114237
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018219.1chromosomeCM018219.1:1282025..1282181 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:1174191..1174347 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Ghir_A05chromosomeGhir_A05:1458102..1458251 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Dt05chromosomeDt05:1147648..1147804 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold22530supercontigscaffold22530:31083..31239 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold19979supercontigscaffold19979:46604..46753 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D05chromosomeGbar_D05:1295280..1295436 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:1279236..1279385 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:1415178..1415334 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017653.1chromosomeCM017653.1:1271790..1271946 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:1285212..1285368 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
Chr05chromosomeChr05:1179115..1179271 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_05chromosomeB_05:84599079..84599235 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:1278936..1279089 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09_3471830chromosomeChr09_3471830:3050..3206 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeHAU0812:1..506 .
Chr09:1163700..1164305 -		n/a
Chr9chromosomeHAU0812:1..506 .
Chr9:1186633..1187238 -		n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
CO114237CO114237Gossypium spp.sequence_feature


Sequence
>HAU0812 ID=HAU0812; Name=HAU0812; organism=Gossypium spp.; type=genetic_marker; length=157bp
TGGTAGCCCATTTTGACTTTAGAGATCATTTCCTTTTTAAAGTCATATTG
GTAGTAAAAGTTTCCCCTTTGTAACAACGCCATTGTTGTTGTTGTTGATG
ATGATGATGATTCCGGTCAATTTAGGAAAAGAGTTGAAACTTGAACCCCC
ATTGTTA