HAU0771, HAU0771 (genetic_marker) gossypium spp

Marker Overview
NameHAU0771
Genbank IDCO090417
TypeSSR
SpeciesGossypium spp.
Source SequenceCO090417
Source TypeEST
Repeat Motif(ATT)9
PCR ConditionAnnealing temperature: 57.1
Primer 1HAU0771_F: CAAAGTAAAAGTGGCCCATC
Primer 2HAU0771_R: CCCAAACGTATGTTCCCTAC
Product Length157
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCO090417
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A11chromosomeA11:40548402..40548561 +
D11chromosomeD11:39120676..39120832 -
A11chromosomeA11:43743084..43743242 -
CM018212.1chromosomeCM018212.1:39070725..39070884 +
CM018225.1chromosomeCM018225.1:36751895..36752051 -
D5_11chromosomeD5_11:30194068..30194224 +
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:61157348..61157507 +
D10_11chromosomeD10_11:36288467..36288633 +
Dt_chr7chromosomeDt_chr7:44643181..44643337 +
At_chr1chromosomeAt_chr1:72846522..72846681 +
A11chromosomeA11:38001846..38002005 +
D11chromosomeD11:37216907..37217063 -
Ghir_A11chromosomeGhir_A11:39926735..39926894 +
Ghir_D11chromosomeGhir_D11:38072538..38072694 -
A11chromosomeA11:39125809..39125968 +
D11chromosomeD11:37152767..37152923 -
A11chromosomeA11:39830747..39830906 +
D11chromosomeD11:38150674..38150830 -
A11chromosomeA11:40439354..40439513 +
D11chromosomeD11:37639873..37640029 -
At11chromosomeAt11:42500403..42500562 +
scaffold8112supercontigscaffold8112:108143..108302 +
scaffold288supercontigscaffold288:436747..436903 +
Gbar_A11chromosomeGbar_A11:38855971..38856130 +
Gbar_D11chromosomeGbar_D11:37085325..37085481 -
A11chromosomeA11:39093296..39093455 +
D11chromosomeD11:36887015..36887171 -
CM017620.1chromosomeCM017620.1:39989982..39990141 +
CM017633.1chromosomeCM017633.1:37246995..37247151 -
CM017646.1chromosomeCM017646.1:41821179..41821338 +
CM017659.1chromosomeCM017659.1:37978118..37978274 -
CM017698.1chromosomeCM017698.1:39589984..39590143 +
CM017711.1chromosomeCM017711.1:36982059..36982215 -
A11chromosomeA11:40799445..40799604 +
D11chromosomeD11:38444473..38444629 -
Chr11chromosomeChr11:61655070..61655229 +
Chr11chromosomeChr11:62211482..62211641 -
Chr11chromosomeChr11:28180787..28180943 +
Chr07chromosomeChr07:37217138..37217294 -
Chr_07chromosomeChr_07:28549054..28549283 -
Chr07chromosomeChr07:37243043..37243223 -
Chr07chromosomeChr07:25438485..25438659 -
Chr07_3401793chromosomeChr07_3401793:10418..10580 +
Chr07chromosomeChr07:27152983..27153136 -
E11chromosomeE11:62702498..62702651 +
F11chromosomeF11:48908162..48908357 -
Chr11chromosomeChr11:55646292..55646442 -
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
CO090417CO090417Gossypium spp.sequence_feature


Sequence
>HAU0771 ID=HAU0771; Name=HAU0771; organism=Gossypium spp.; type=genetic_marker; length=157bp
CAAAGTAAAAGTGGCCCATCCCGGAATTTGGAAATGGAATTCCAGTGGTT
TAACAAGTGAAGAAGGTGAGAGAGATAATTATCATTATTATTATTGTTAC
TATTATTATTTTTCCCGGAAATTTGATGATTGATCAAGTAGGGAACATAC
GTTTGGG