HAU0508, HAU0508 (genetic_marker) gossypium spp

Marker Overview


Name	HAU0508
Genbank ID	BQ401510
Type	SSR
Species	Gossypium spp.
Source Sequence	BQ401510
Source Type	EST
Repeat Motif	(GT)8
PCR Condition	Annealing temperature: 57.1
Primer 1	HAU0508_F: AAGCAACCAAATTCAAGAGG
Primer 2	HAU0508_R: CTTGTGTTGCCTTTTTACCC
Product Length	226
Publication	[view all]
Comment	Primer data obtained in 2012

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	BQ401510

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM018214.1	chromosome	CM018214.1:6593344..6593887 +
Chr13_CRI-A2_v1.0.a1	chromosome	Chr13_CRI-A2_v1.0.a1:5920415..5920958 +
Gbar_A13	chromosome	Gbar_A13:6730078..6730621 +
A13	chromosome	A13:6531210..6531753 +
CM017622.1	chromosome	CM017622.1:6806776..6807319 +
CM017648.1	chromosome	CM017648.1:6912023..6912566 +
CM017700.1	chromosome	CM017700.1:6469182..6469725 +
Chr13	chromosome	Chr13:7085610..7086153 +
Chr13	chromosome	Chr13:5908040..5908583 -

Publications


Year	Publication
2011	Yu Y, Yuan D, Liang S, Li X, Wang X, Lin Z, Zhang X. Genome structure of cotton revealed by a genome-wide SSR genetic map constructed from a BC1 population between gossypium hirsutum and G. barbadense. BMC genomics. 2011; 12:15

Relationships

The following sequence_feature feature(s) derives from this genetic_marker:


Feature Name	Unique Name	Species	Type
BQ401510	BQ401510	Gossypium spp.	sequence_feature

Sequence

>HAU0508 ID=HAU0508; Name=HAU0508; organism=Gossypium spp.; type=genetic_marker; length=226bp
AAGCAACCAAATTCAAGAGGCACTTTGTTTTGGCTTTTGGGTTTCTCATA
ATTCAAATTTCACAAAATAGAAAAAATAAAATGTTGATGCGATTTTCCCT
TCAAAGAGTGAAGAATTTATTAAGTTCTTCCAGTTATCGTTTCTCTACAG
CGACTGAACCCTCTTTAAATCAGCGAAATCCTCCGGTGTGTGCGTGTGTG
TTGTTTGGGTAAAAAGGCAACACAAG

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HAU0508, HAU0508 (genetic_marker) gossypium spp