HAU0426, HAU0426 (genetic_marker) gossypium spp

Marker Overview
NameHAU0426
Genbank IDBG442384
TypeSSR
SpeciesGossypium spp.
Source SequenceBG442384
Source TypeEST
Repeat Motif(CT)8
PCR ConditionAnnealing temperature: 57.1
Primer 1HAU0426_F: TCTATCCATAGCACCCCATT
Primer 2HAU0426_R: TACTTTCCCTTTTGCTTTGC
Product Length250
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBG442384
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018210.1chromosomeCM018210.1:30882..31302 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:3881..4287 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:27940..28356 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:48143..48558 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Ghir_A08chromosomeGhir_A08:30509..30916 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A08chromosomeA08:7316..7725 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold19986supercontigscaffold19986:49790..50210 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A09chromosomeGbar_A09:49759..50178 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A09chromosomeA09:239416..239964 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017696.1chromosomeCM017696.1:219347..219765 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:118168760..118169175 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:16144..16564 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:9126..9544 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_11chromosomeB_11:102313960..102314370 +Gossypium anomalum (B1) genome NSF_v1n/a
B_09chromosomeB_09:33736..34150 -Gossypium anomalum (B1) genome NSF_v1n/a
E06chromosomeE06:118502744..118503026 +Gossypium stocksii (E1) genome NSF_v1n/a
E05chromosomeE05:100132415..100132834 +Gossypium stocksii (E1) genome NSF_v1n/a
E01chromosomeE01:116869743..116870024 +Gossypium stocksii (E1) genome NSF_v1n/a
E12chromosomeE12:33843..34267 -Gossypium stocksii (E1) genome NSF_v1n/a
E01chromosomeE01:2900..3299 -Gossypium stocksii (E1) genome NSF_v1n/a
F12chromosomeF12:91283927..91284355 +Gossypium longicalyx (F1) genome NSF_v1n/a
F03chromosomeF03:110213409..110213822 +Gossypium longicalyx (F1) genome NSF_v1n/a
F11chromosomeF11:5221..5632 -Gossypium longicalyx (F1) genome NSF_v1n/a
F07chromosomeF07:57047..57472 -Gossypium longicalyx (F1) genome NSF_v1n/a
F03chromosomeF03:41699..42122 -Gossypium longicalyx (F1) genome NSF_v1n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BG442384BG442384Gossypium spp.sequence_feature


Sequence
>HAU0426 ID=HAU0426; Name=HAU0426; organism=Gossypium spp.; type=genetic_marker; length=250bp
TCTATCCATAGCACCCCATTTATTCGTCGACTCCCTCTCTCTCTCTCTCT
GTCTGTTTTGAATTTCTTGCTCTCATTTTTTTCTAGTTTTGGGTCACCGA
ATGCCAAAAAAAAAAAAAACACAGAAAGACGGTACACGAGGTTTTCTCTG
CCGTTTCTGGTTTTTGTGATTTTTTGAAATTCTCTGCTTCATCGGTGACT
GATTTCAGATATATTTATTTATCACTCGAAGCAAAGCAAAAGGGAAAGTA