HAU0424, HAU0424 (genetic_marker) gossypium spp

Marker Overview
NameHAU0424
Genbank IDBG442249
TypeSSR
SpeciesGossypium spp.
Source SequenceBG442249
Source TypeEST
Repeat Motif(CTC)5
PCR ConditionAnnealing temperature: 56.9
Primer 1HAU0424_F: ATCTTCCCCTTTCATCTCCT
Primer 2HAU0424_R: AAAACGGGTTCAGTCAATGT
Product Length180
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBG442249
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:299241..299420 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A10chromosomeA10:297818..297997 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:308106..308285 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018211.1chromosomeCM018211.1:279243..279422 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:62128250..62128428 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_10chromosomeKI_10:46986791..46986970 -Gossypioides kirkii genome ISU_v3n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:129162068..129162247 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:63608132..63608311 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016623.1chromosomeCM016623.1:511964..512143 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold413.1supercontigscaffold413.1:860895..861074 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold26.1supercontigscaffold26.1:3106385..3106564 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:251056..251235 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A10chromosomeA10:279580..279759 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold164630supercontigscaffold164630:151..326 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:305165..305344 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D10chromosomeGhir_D10:541824..542003 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:310265..310444 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:273475..273654 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:328671..328850 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:328864..329043 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A10chromosomeA10:312285..312464 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt10chromosomeDt10:385180..385359 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Dt10chromosomeDt10:379738..379917 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold20203supercontigscaffold20203:286329..286508 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold20203supercontigscaffold20203:280887..281066 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold19499supercontigscaffold19499:94677..94856 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold19499supercontigscaffold19499:88018..88197 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D10chromosomeGbar_D10:296360..296539 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A10chromosomeGbar_A10:361603..361782 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:338425..338604 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A10chromosomeA10:335361..335540 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:309107..309286 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017619.1chromosomeCM017619.1:324318..324497 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017645.1chromosomeCM017645.1:354654..354833 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017646.1chromosomeCM017646.1:6362188..6362367 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:319363..319542 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017697.1chromosomeCM017697.1:337106..337285 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:277273..277452 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A10chromosomeA10:291827..292006 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:371827..372006 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:348784..348963 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:264805..264984 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:95641774..95641953 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:296936..297115 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:235424..235651 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:219795..219974 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:282394..282573 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:229232..229411 +Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:239223..239402 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:261952..262131 +Gossypium lobatum (D7) genome ISU_v1n/a
E10chromosomeE10:113609978..113610157 -Gossypium stocksii (E1) genome NSF_v1n/a
F10chromosomeF10:296472..296651 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr10chromosomeChr10:169358971..169359150 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr11chromosomeHAU0424:1..614 .
Chr11:298765..299802 +		n/a
Chr11chromosomeHAU0424:1..614 .
Chr11:300550..301587 +		n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BG442249BG442249Gossypium spp.sequence_feature


Sequence
>HAU0424 ID=HAU0424; Name=HAU0424; organism=Gossypium spp.; type=genetic_marker; length=180bp
ATCTTCCCCTTTCATCTCCTCTAACATCCCTCCTCCGCCACCTGTCTCCT
CCTCATCCTCCCTTCAAAAATTGCAATCCGTCCCCGCCGCTCCTCCTCCA
CCTCCACCTGTTGGTAATTCTAGCAGCATTGTCGCCAATGGGTTTGGTCC
TCCGCCGAATACATTGACTGAACCCGTTTT