HAU0400, HAU0400 (genetic_marker) gossypium spp

Marker Overview
NameHAU0400
Genbank IDBF279248
TypeSSR
SpeciesGossypium spp.
Source SequenceBF279248
Source TypeEST
Repeat Motif(ATC)5
PCR ConditionAnnealing temperature: 56.9
Primer 1HAU0400_F: GAGCGTTTGGTTTTGATTTT
Primer 2HAU0400_R: GTTCCAACATCCCCAAGTAG
Product Length295
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBF279248
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ghir_A09chromosomeGhir_A09:58113871..58115090 +
Gbar_A09chromosomeGbar_A09:55006097..55007315 +
CM017657.1chromosomeCM017657.1:33505135..33506319 +
CM017696.1chromosomeCM017696.1:55933837..55935055 +
D09chromosomeD09:34641183..34642367 +
A09chromosomeA09:61143919..61145139 +
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BF279248BF279248Gossypium spp.sequence_feature


Sequence
>HAU0400 ID=HAU0400; Name=HAU0400; organism=Gossypium spp.; type=genetic_marker; length=295bp
GAGCGTTTGGTTTTGATTTTGTTGGAAGGTTGATTGAGGAAAATAAAGAT
AAAAATAAAAATTTCCCTTTACATTGATTTTATGCTTCTTCATCAACCTT
CTCAACAGTCCCACAACTCTCAATTTTTCTTCTTAATTTTGTCTCCCTAA
AACGTTCCTACGTATATTTCTTGTCCTGTTATTATTTTTGGAGCTTAAAA
ATCTGATCATCATCATCATCGTCGAACCACCTCATGGCCACCACTGCAAA
CAAGACCATCAATGCTTAAATAGTTCTACTTGGGGATGTTGGAAC