HAU0314, HAU0314 (genetic_marker) gossypium spp

Marker Overview
NameHAU0314
Genbank IDBE051980
TypeSSR
SpeciesGossypium spp.
Source SequenceBE051980
Source TypeEST
Repeat Motif(AC)8
PCR ConditionAnnealing temperature: 57.1
Primer 1HAU0314_F: GGTTCAGGTTAGGTGTTTGC
Primer 2HAU0314_R: ACCCCATTCTTAACCTCACA
Product Length268
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBE051980
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A12chromosomeA12:21860526..21860779 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018213.1chromosomeCM018213.1:20173464..20173717 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:87816332..87816594 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016625.1chromosomeCM016625.1:42425203..42425483 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr8chromosomeAt_chr8:64408800..64409053 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A12chromosomeA12:20106202..20106455 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A12chromosomeGhir_A12:20421668..20421919 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A12chromosomeA12:19770578..19770831 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:20405647..20405900 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:20390397..20390650 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A12chromosomeGbar_A12:20224699..20224950 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A12chromosomeA12:19965921..19966174 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017621.1chromosomeCM017621.1:19941966..19942219 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017647.1chromosomeCM017647.1:20696025..20696280 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017699.1chromosomeCM017699.1:20050334..20050596 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A12chromosomeA12:20546046..20546298 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:72206925..72207187 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:18833732..18833997 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr08chromosomeChr08:11339674..11339980 +Gossypium aridum (D4) genome ISU_v1n/a
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BE051980BE051980Gossypium spp.sequence_feature


Sequence
>HAU0314 ID=HAU0314; Name=HAU0314; organism=Gossypium spp.; type=genetic_marker; length=268bp
GGTTCAGGTTAGGTGTTTGCTAGGCTATAACCTGAATATGATAAAGAGGT
AGAGTGAATTTCGTCGTCGCAATCAATGCCCCTACCTCAACATCTTCGAT
TATGGCTTATTTCATTTGTCTAGCACAAGCTTATTGACACCCCCCCCCCC
CCCTACACACACACACACAATTGAAGCCAATGAACCTCCTGCGAGTGCAA
CTTAACATTGACCAAGCTTTAGACATTTTATGTTTTCTTTTTGCCCACTG
TGAGGTTAAGAATGGGGT