USDA_SNP0251, USDA_SNP0251 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_SNP0251
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i00058Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium hirsutum
Publication[view all]
ContactStelly, David M.
Gore, Michael A.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018209.1chromosomeCM018209.1:59562532..59562594 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:69014258..69014320 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016621.1chromosomeCM016621.1:53052511..53052573 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr4chromosomeAt_chr4:8711009..8711071 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr4chromosomeAt_chr4:8710876..8710938 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A08chromosomeA08:52871362..52871424 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:31623525..31623587 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A08chromosomeA08:73416188..73416250 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:72848296..72848358 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:61974897..61974959 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A08chromosomeGbar_A08:60627498..60627560 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A08chromosomeA08:69693733..69693795 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017617.1chromosomeCM017617.1:61434032..61434094 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017643.1chromosomeCM017643.1:67799445..67799507 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017695.1chromosomeCM017695.1:60909386..60909448 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A08chromosomeA08:65440919..65440981 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:78943001..78943063 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:67488010..67488072 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_08chromosomeB_08:51768719..51768781 +Gossypium anomalum (B1) genome NSF_v1n/a
E08chromosomeE08:61883672..61883734 +Gossypium stocksii (E1) genome NSF_v1n/a
F08chromosomeF08:53167594..53167656 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr08chromosomeChr08:80717699..80717761 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0251 ID=USDA_SNP0251; Name=USDA_SNP0251; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGATC[A/G]GTCCCATTTGTTGCTTATCGAAGAGCAGAATTTACAG
TCTAGTTTCATTGAAGC