USDA_SNP0250, USDA_SNP0250 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_SNP0250
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i00057Gh
TypeSNP
SNP AllelesG/T
SpeciesGossypium hirsutum
Publication[view all]
ContactStelly, David M.
Gore, Michael A.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr09chromosomeChr09:49672277..49672277 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018219.1chromosomeCM018219.1:53766795..53766857 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:48474206..48474268 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_05chromosomeD5_05:48445918..48445980 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D05chromosomeD05:53138698..53138760 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D05chromosomeD05:53160892..53160954 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:54067244..54067306 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D05chromosomeGhir_D05:54088919..54088981 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:55082078..55082140 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:55103451..55103513 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
Gbar_D05chromosomeGbar_D05:53882440..53882502 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:56029013..56029075 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:54678852..54678914 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:56193991..56194053 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017653.1chromosomeCM017653.1:56167479..56167541 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:54755302..54755364 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:56978939..56979001 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D05chromosomeD05:57000646..57000708 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:49351983..49352045 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr05chromosomeChr05:49330915..49330977 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr09chromosomeChr09:50253282..50253344 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr09chromosomeChr09:50247745..50247807 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr09chromosomeChr09:52970743..52970805 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Sequence
>USDA_SNP0250 ID=USDA_SNP0250; Name=USDA_SNP0250; organism=Gossypium hirsutum; type=genetic_marker; length=68bp
TGCAGATATGTTATTGATGATCTCCAGCAGCTTACTACTGGTTACTCACT
ATAAATTTGTTTG[G/T]