USDA_SNP0226, USDA_SNP0226 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_SNP0226
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i00048Gh
TypeSNP
SNP AllelesA/C
SpeciesGossypium hirsutum
Publication[view all]
ContactStelly, David M.
Gore, Michael A.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr08chromosomeChr08:3848553..3848553 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018226.1chromosomeCM018226.1:3963880..3963942 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018213.1chromosomeCM018213.1:7151606..7151668 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:53529716..53529778 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_12chromosomeKI_12:13289964..13290026 +Gossypioides kirkii genome ISU_v3n/a
tig00016096_CRI-A2_v1.0.a1chromosometig00016096_CRI-A2_v1.0.a1:648953..649015 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_12chromosomeD10_12:3691631..3691693 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016625.1chromosomeCM016625.1:120714279..120714341 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr8chromosomeAt_chr8:38976078..38976140 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold223630supercontigscaffold223630:102..164 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A12chromosomeA12:7297555..7297617 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A12chromosomeGhir_A12:7358794..7358856 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A12chromosomeA12:7079713..7079775 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:7394212..7394274 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:4021793..4021855 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A12chromosomeA12:7372081..7372143 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:3934069..3934131 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A12chromosomeGbar_A12:7294916..7294978 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:3876501..3876563 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A12chromosomeA12:7102337..7102399 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:3984709..3984771 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017621.1chromosomeCM017621.1:7056528..7056590 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:3864327..3864389 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017647.1chromosomeCM017647.1:7507544..7507606 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:3955354..3955416 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017699.1chromosomeCM017699.1:7028801..7028863 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A12chromosomeA12:7422137..7422199 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:4854737..4854799 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:4915474..4915536 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr12chromosomeChr12:3880635..3880697 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_12chromosomeB_12:4993214..4993276 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr08chromosomeChr08:3850335..3850397 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr08chromosomechr08:3710416..3710478 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_08chromosomeChr_08:3772364..3772426 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:3852263..3852325 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:3645646..3645708 +Gossypium aridum (D4) genome ISU_v1n/a
Chr08chromosomeChr08:2555443..2555505 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr08chromosomeChr08:3571255..3571317 +Gossypium lobatum (D7) genome ISU_v1n/a
F12chromosomeF12:4066028..4066090 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr12chromosomeChr12:155670605..155670667 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0226 ID=USDA_SNP0226; Name=USDA_SNP0226; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGAGACAA[A/C]AACTTCCTTTCCATCAATGCCATTGCCTTTTGAT
GATTCAACAGCATTGAA