USDA_SNP0209, USDA_SNP0209 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_SNP0209
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i00043Gh
TypeSNP
SNP AllelesC/T
SpeciesGossypium hirsutum
Publication[view all]
ContactStelly, David M.
Gore, Michael A.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018209.1chromosomeCM018209.1:2254995..2255057 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
KI_08chromosomeKI_08:2242698..2242760 +Gossypioides kirkii genome ISU_v3n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:2796050..2796112 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold72.1supercontigscaffold72.1:972369..972431 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A08chromosomeA08:1815622..1815684 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A08chromosomeGhir_A08:2611519..2611581 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A08chromosomeA08:2385803..2385865 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:2603159..2603221 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:2208792..2208854 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A08chromosomeGbar_A08:2499102..2499164 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A08chromosomeA08:2354600..2354662 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017617.1chromosomeCM017617.1:2388340..2388402 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017643.1chromosomeCM017643.1:2507486..2507548 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017695.1chromosomeCM017695.1:2464103..2464165 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A08chromosomeA08:2655480..2655542 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:2747946..2748008 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:2659325..2659387 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
F08chromosomeF08:2135605..2135667 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>USDA_SNP0209 ID=USDA_SNP0209; Name=USDA_SNP0209; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGAATGCATTCGAACTGGCTTCGTTTTTCTGGTTCTGGGTACCTTCT
GTTCTCTGACT[C/T]G