USDA_SNP0203, USDA_SNP0203 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_SNP0203
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i00042Gh
TypeSNP
SNP AllelesC/T
SpeciesGossypium hirsutum
Publication[view all]
ContactStelly, David M.
Gore, Michael A.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr08chromosomeChr08:7102421..7102421 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018213.1chromosomeCM018213.1:9569826..9569888 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:97162127..97162189 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold147435supercontigscaffold147435:145..207 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D12chromosomeD12:7469759..7469821 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A12chromosomeA12:9730543..9730605 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A12chromosomeGhir_A12:9844607..9844669 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A12chromosomeA12:9415711..9415773 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:9816108..9816170 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:9798739..9798801 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A12chromosomeGbar_A12:9829169..9829231 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A12chromosomeA12:9515050..9515112 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017621.1chromosomeCM017621.1:9531169..9531231 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017647.1chromosomeCM017647.1:10099151..10099213 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017699.1chromosomeCM017699.1:9492631..9492693 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A12chromosomeA12:9846962..9847024 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:10223794..10223856 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:10058366..10058428 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_12chromosomeB_12:10853833..10853895 -Gossypium anomalum (B1) genome NSF_v1n/a
F12chromosomeF12:8726301..8726363 -Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>USDA_SNP0203 ID=USDA_SNP0203; Name=USDA_SNP0203; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGAATAACTCAGTTTACAGAAAAGGAAACTTTAGAGGATGCGAGACT
AATGCTCAAAA[C/T]A