USDA_SNP0136, USDA_SNP0136 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_SNP0136
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i00029Gh
TypeSNP
SNP AllelesG/T
SpeciesGossypium hirsutum
Publication[view all]
ContactStelly, David M.
Gore, Michael A.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018213.1chromosomeCM018213.1:9065704..9065766 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:50492947..50493009 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:97735104..97735166 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_12chromosomeD10_12:4971672..4971734 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016625.1chromosomeCM016625.1:25897857..25897918 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr8chromosomeAt_chr8:73134898..73134960 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A12chromosomeA12:9200767..9200829 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A12chromosomeGhir_A12:9289446..9289508 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A12chromosomeA12:8915230..8915292 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:9288262..9288324 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:9266756..9266818 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A12chromosomeGbar_A12:9325296..9325358 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A12chromosomeA12:9026200..9026262 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017621.1chromosomeCM017621.1:9027077..9027139 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:7037570..7037632 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017647.1chromosomeCM017647.1:9601023..9601085 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017699.1chromosomeCM017699.1:8988749..8988811 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A12chromosomeA12:9316818..9316880 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:9687842..9687904 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:9488855..9488917 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr12chromosomeChr12:6912505..6912567 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_12chromosomeB_12:10459535..10459597 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr08chromosomeChr08:7060756..7060818 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr08_6504431chromosomechr08_6504431:3837..3898 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_08chromosomeChr_08:6529053..6529115 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:7182923..7182985 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:6119771..6119833 -Gossypium aridum (D4) genome ISU_v1n/a
Chr08chromosomeChr08:4499978..4500040 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr08chromosomeChr08:5734527..5734589 -Gossypium lobatum (D7) genome ISU_v1n/a
F12chromosomeF12:8242338..8242400 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr12chromosomeChr12:144113762..144113823 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0136 ID=USDA_SNP0136; Name=USDA_SNP0136; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGTAATATAAATTATTATACAATTGAGGGCAACTCTTTCTCAGGTAC
AACA[G/T]ACATAAAT