USDA_SNP0134, USDA_SNP0134 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_SNP0134
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i00028Gh
TypeSNP
SNP AllelesA/C
SpeciesGossypium hirsutum
Publication[view all]
ContactStelly, David M.
Gore, Michael A.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr06chromosomeChr06:49161436..49161436 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018223.1chromosomeCM018223.1:48548492..48548554 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018210.1chromosomeCM018210.1:74804451..74804513 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:41809871..41809933 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:82764257..82764319 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016622.1chromosomeCM016622.1:2953764..2953826 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold251.1supercontigscaffold251.1:242660..242722 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold288.1supercontigscaffold288.1:546716..546778 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:48769010..48769072 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A09chromosomeA09:72663652..72663714 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:50764582..50764644 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A09chromosomeGhir_A09:79791157..79791219 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:50040058..50040120 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:81024002..81024064 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:50513186..50513248 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:81258177..81258239 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:48599129..48599191 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D09chromosomeGbar_D09:49401366..49401428 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A09chromosomeGbar_A09:75633068..75633130 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:51776044..51776106 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A09chromosomeA09:77049189..77049251 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:49493062..49493124 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017618.1chromosomeCM017618.1:76989673..76989735 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:51051855..51051917 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017644.1chromosomeCM017644.1:80376990..80377052 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:50222946..50223008 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017696.1chromosomeCM017696.1:77139189..77139251 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:52384371..52384433 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A09chromosomeA09:83058928..83058990 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:82139837..82139899 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:84899155..84899217 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr09chromosomeChr09:48033654..48033716 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_09chromosomeB_09:68417030..68417092 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr06chromosomeChr06:48863722..48863784 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr06chromosomeChr06:49955097..49955159 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:37900430..37900492 -Gossypium aridum (D4) genome ISU_v1n/a
Chr06chromosomeChr06:28743379..28743441 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr06chromosomeChr06:35193346..35193408 -Gossypium lobatum (D7) genome ISU_v1n/a
E09chromosomeE09:2680660..2680722 +Gossypium stocksii (E1) genome NSF_v1n/a
F09chromosomeF09:68722113..68722175 -Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>USDA_SNP0134 ID=USDA_SNP0134; Name=USDA_SNP0134; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGTAAATGTTCAAATGAAGCACACTGTTCCACAGCCATTTGCCCTTG
CAATTC[A/C]AAACTG