USDA_SNP0109, USDA_SNP0109 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_SNP0109
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i00024Gh
TypeSNP
SNP AllelesA/C
SpeciesGossypium hirsutum
Publication[view all]
ContactStelly, David M.
Gore, Michael A.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr05chromosomeChr05:1834437..1834437 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018216.1chromosomeCM018216.1:1906282..1906344 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:1842878..1842940 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_03chromosomeD10_03:62935469..62935531 +Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold1140.1supercontigscaffold1140.1:286413..286475 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:2240088..2240150 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:2178768..2178830 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:1995323..1995385 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:2187607..2187669 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:2057185..2057247 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D02chromosomeGbar_D02:2097082..2097144 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:1912666..1912728 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:2199348..2199410 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:2327440..2327502 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:1810457..1810519 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:2191403..2191465 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:130656658..130656720 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:42836365..42836427 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr03chromosomeChr03:129034173..129034235 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr03chromosomeChr03:1892460..1892522 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_03chromosomeB_03:105106672..105106734 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr05chromosomeChr05:2036616..2036678 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr05chromosomechr05:1680187..1680249 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_05chromosomeChr_05:1994598..1994660 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr05chromosomeChr05:1693743..1693805 +Gossypium aridum (D4) genome ISU_v1n/a
Chr05chromosomeChr05:1449751..1449813 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr05chromosomeChr05:1695206..1695268 +Gossypium lobatum (D7) genome ISU_v1n/a
F03chromosomeF03:1762571..1762633 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>USDA_SNP0109 ID=USDA_SNP0109; Name=USDA_SNP0109; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGGGAG[A/C]AAGAGATGTGCATCTGCCTTCCTGTTTGATTCTAAC
CAATTACCATCATGGAA