USDA_SNP0092, USDA_SNP0092 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_SNP0092
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i00020Gh
TypeSNP
SNP AllelesC/T
SpeciesGossypium hirsutum
Publication[view all]
ContactStelly, David M.
Gore, Michael A.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
Chr06chromosomeChr06:47111960..47111960 .Gossypium raimondii (D5) genome JGI_v2_a2.1
CM018210.1chromosomeCM018210.1:72562007..72562069 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:80032351..80032413 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
Dt_chr6chromosomeDt_chr6:3911096..3911158 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
A09chromosomeA09:71195291..71195353 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_A09chromosomeGhir_A09:77311194..77311256 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
A09chromosomeA09:78625028..78625090 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A09chromosomeA09:78780847..78780909 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A09chromosomeA09:75357065..75357127 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Gbar_D09chromosomeGbar_D09:47268836..47268898 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
Gbar_A09chromosomeGbar_A09:73242952..73243014 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
A09chromosomeA09:74673207..74673269 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017618.1chromosomeCM017618.1:74645779..74645841 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017644.1chromosomeCM017644.1:77633874..77633936 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017696.1chromosomeCM017696.1:74771439..74771501 -Gossypium darwinii (AD5) genome HGS_v1.1
A09chromosomeA09:80583056..80583118 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr09chromosomeChr09:79685021..79685083 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr09chromosomeChr09:82442560..82442622 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
F09chromosomeF09:66620832..66620894 -Gossypium longicalyx (F1) genome NSF_v1
Sequence
>USDA_SNP0092 ID=USDA_SNP0092; Name=USDA_SNP0092; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGCTTTTCATTTGTCAAATTGATGCAAAATTGCTCAAAACTGCATGC
AATGAAAATTT[C/T]G