USDA_SNP0084, USDA_SNP0084 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_SNP0084
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i00018Gh
TypeSNP
SNP AllelesA/C
SpeciesGossypium hirsutum
Publication[view all]
ContactStelly, David M.
Gore, Michael A.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr05chromosomeChr05:57452834..57452834 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018216.1chromosomeCM018216.1:60127861..60127923 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018204.1chromosomeCM018204.1:97989068..97989130 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:6790727..6790789 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_03chromosomeKI_03:37339896..37339958 -Gossypioides kirkii genome ISU_v3n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:127347778..127347840 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_03chromosomeD10_03:6624971..6625033 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016616.1chromosomeCM016616.1:9679403..9679465 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr5chromosomeAt_chr5:49125445..49125507 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr5chromosomeDt_chr5:14564056..14564118 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:60967428..60967490 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A03chromosomeA03:92668929..92668991 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:62733825..62733887 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A03chromosomeGhir_A03:104614681..104614743 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:63017438..63017500 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:103580807..103580869 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:64139898..64139960 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:101691788..101691850 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:61185598..61185660 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A03chromosomeA03:96940195..96940257 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D02chromosomeGbar_D02:60700013..60700075 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A03chromosomeGbar_A03:97160334..97160396 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:61998871..61998933 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A03chromosomeA03:99411329..99411391 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:63015716..63015778 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017612.1chromosomeCM017612.1:98770885..98770947 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:64617411..64617475 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017638.1chromosomeCM017638.1:105938980..105939042 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:61598157..61598219 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017690.1chromosomeCM017690.1:99817290..99817352 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:65116669..65116731 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A03chromosomeA03:105264842..105264904 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:8417934..8417996 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:8347071..8347133 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr03chromosomeChr03:56307033..56307095 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_03chromosomeB_03:8330636..8330698 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr05chromosomeChr05:59157055..59157117 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr05chromosomechr05:44677180..44677242 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_05chromosomeChr_05:38584702..38584764 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr05chromosomeChr05:60956576..60956638 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:39052877..39052939 -Gossypium aridum (D4) genome ISU_v1n/a
Chr05chromosomeChr05:33074690..33074752 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr05chromosomeChr05:40555617..40555678 -Gossypium lobatum (D7) genome ISU_v1n/a
E03chromosomeE03:116692785..116692847 -Gossypium stocksii (E1) genome NSF_v1n/a
F03chromosomeF03:102981850..102981912 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr03chromosomeChr03:11869468..11869530 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0084 ID=USDA_SNP0084; Name=USDA_SNP0084; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGCTGT[A/C]TTTTAGATTAGATGTTGGTTTTGGGCATTTGTTGCA
TGTTTAAAGGTGAAGCA