USDA_SNP0077, USDA_SNP0077 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_SNP0077
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i00017Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium hirsutum
Publication[view all]
ContactStelly, David M.
Gore, Michael A.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018206.1chromosomeCM018206.1:22853049..22853111 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:23535501..23535563 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr9chromosomeAt_chr9:40620122..40620184 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A05chromosomeA05:21239937..21239999 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A05chromosomeGhir_A05:23393747..23393809 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A05chromosomeA05:22729321..22729383 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:23448731..23448793 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:23593182..23593244 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A05chromosomeGbar_A05:22527199..22527261 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A05chromosomeA05:23215034..23215096 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:23024650..23024712 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017640.1chromosomeCM017640.1:23368343..23368405 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017692.1chromosomeCM017692.1:22760640..22760702 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:23805962..23806024 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:25031551..25031613 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:23457425..23457487 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Sequence
>USDA_SNP0077 ID=USDA_SNP0077; Name=USDA_SNP0077; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGCGTGTATGTATCATATATGCGATGGACAAGGAAAAAATAACAGTT
AAAAC[A/G]AAAATCG