USDA_SNP0075, USDA_SNP0075 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_SNP0075
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i00015Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium hirsutum
Publication[view all]
ContactStelly, David M.
Gore, Michael A.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018210.1chromosomeCM018210.1:59528286..59528348 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:66091826..66091888 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr6chromosomeAt_chr6:46887736..46887798 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold2311_A09supercontigscaffold2311_A09:13614..13676 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A09chromosomeGhir_A09:63467432..63467494 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A09chromosomeA09:65422176..65422238 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:65218781..65218843 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:62105101..62105163 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A09chromosomeGbar_A09:59972156..59972218 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A09chromosomeA09:61472437..61472499 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017618.1chromosomeCM017618.1:61105557..61105619 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017644.1chromosomeCM017644.1:64003132..64003194 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017696.1chromosomeCM017696.1:61362677..61362739 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A09chromosomeA09:66566971..66567033 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:65520230..65520292 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:68578981..68579043 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Sequence
>USDA_SNP0075 ID=USDA_SNP0075; Name=USDA_SNP0075; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGCGTCAGGCACATACAGATCTCTGATTAAACTATATAAAGATAAAG
GCTCCAC[A/G]ACCAT