USDA_SNP0074, USDA_SNP0074 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_SNP0074
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i00014Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium hirsutum
Publication[view all]
ContactStelly, David M.
Gore, Michael A.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr06chromosomeChr06:48161501..48161501 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018223.1chromosomeCM018223.1:47496074..47496136 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018210.1chromosomeCM018210.1:73738316..73738378 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:40812677..40812739 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_09chromosomeKI_09:36161432..36161494 +Gossypioides kirkii genome ISU_v3n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:81731617..81731679 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_09chromosomeD10_09:3087901..3087963 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016622.1chromosomeCM016622.1:4445378..4445440 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold4895.1supercontigscaffold4895.1:25123..25185 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold251.1supercontigscaffold251.1:1357098..1357160 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold2287_A09supercontigscaffold2287_A09:25542..25604 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D09chromosomeD09:47746347..47746409 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:49722909..49722971 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:49053157..49053219 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:79904665..79904727 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:49470215..49470277 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:80079360..80079422 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:47565043..47565105 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A09chromosomeA09:76650216..76650278 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D09chromosomeGbar_D09:48375562..48375624 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A09chromosomeGbar_A09:74489670..74489732 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:50741984..50742046 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A09chromosomeA09:75892907..75892969 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:48481253..48481315 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017618.1chromosomeCM017618.1:75860068..75860130 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:49966310..49966372 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017644.1chromosomeCM017644.1:79088874..79088936 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:49149402..49149464 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017696.1chromosomeCM017696.1:75990682..75990744 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:51311779..51311841 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A09chromosomeA09:81899879..81899941 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:80991925..80991987 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:83737475..83737537 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr09chromosomeChr09:47032698..47032760 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_09chromosomeB_09:67253281..67253343 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr06chromosomeChr06:47780968..47781030 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr06chromosomechr06:39657765..39657827 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_06chromosomeChr_06:33294233..33294295 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:48899509..48899571 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:36857058..36857120 +Gossypium aridum (D4) genome ISU_v1n/a
Chr06chromosomeChr06:27930550..27930612 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr06chromosomeChr06:34169764..34169826 +Gossypium lobatum (D7) genome ISU_v1n/a
E09chromosomeE09:4239595..4239657 -Gossypium stocksii (E1) genome NSF_v1n/a
F09chromosomeF09:67641207..67641269 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr09chromosomeChr09:128612151..128612213 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0074 ID=USDA_SNP0074; Name=USDA_SNP0074; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGCGCAGAATCTGAAAATCACTCTTGAAAGGAGATATAAAAATGCAA
TTGTGGATA[A/G]TTC