USDA_SNP0070, USDA_SNP0070 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_SNP0070
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i00012Gh
TypeSNP
SNP AllelesC/T
SpeciesGossypium hirsutum
Publication[view all]
ContactStelly, David M.
Gore, Michael A.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr10chromosomeChr10:8230498..8230498 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018220.1chromosomeCM018220.1:8279265..8279327 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018207.1chromosomeCM018207.1:10796089..10796151 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:8328011..8328073 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:9103714..9103776 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_06chromosomeD10_06:51837655..51837717 -Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr10chromosomeAt_chr10:70317840..70317902 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr10chromosomeDt_chr10:22512824..22512886 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr10chromosomeDt_chr10:22509438..22509500 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:8202009..8202071 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A06chromosomeA06:9440136..9440198 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:8974335..8974397 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A06chromosomeGhir_A06:10998404..10998466 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:8697069..8697131 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:10420389..10420451 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:8958723..8958785 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:10873897..10873959 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:8448820..8448882 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A06chromosomeA06:10823942..10824004 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D06chromosomeGbar_D06:8402943..8403005 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A06chromosomeGbar_A06:10540952..10541014 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:8319353..8319415 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A06chromosomeA06:10610297..10610359 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:8919048..8919110 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017615.1chromosomeCM017615.1:10890006..10890068 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:8497876..8497938 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017641.1chromosomeCM017641.1:10706189..10706251 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:8472030..8472092 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017693.1chromosomeCM017693.1:10914000..10914062 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:9089516..9089578 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A06chromosomeA06:10934667..10934729 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:10754129..10754191 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:10898476..10898538 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr06chromosomeChr06:8113753..8113815 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_06chromosomeB_06:86705251..86705313 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr10chromosomeChr10:8757993..8758055 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr10chromosomechr10:7511671..7511733 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_10chromosomeChr_10:6850444..6850506 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:8901985..8902047 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:6220060..6220122 +Gossypium aridum (D4) genome ISU_v1n/a
Chr10chromosomeChr10:5325558..5325620 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr10chromosomeChr10:6633220..6633282 +Gossypium lobatum (D7) genome ISU_v1n/a
E06chromosomeE06:105658238..105658300 -Gossypium stocksii (E1) genome NSF_v1n/a
F06chromosomeF06:9186731..9186793 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>USDA_SNP0070 ID=USDA_SNP0070; Name=USDA_SNP0070; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAG[C/T]CAAGTTGTGTATTTGAATAGCTTGATACCTACTGATATTG
AACATGGTGTTAATGTA