USDA_SNP0049, USDA_SNP0049 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_SNP0049
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i00009Gh
TypeSNP
SNP AllelesA/C
SpeciesGossypium hirsutum
Publication[view all]
ContactStelly, David M.
Gore, Michael A.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr06chromosomeChr06:42636045..42636045 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018210.1chromosomeCM018210.1:67725313..67725375 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:74856083..74856145 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_09chromosomeD10_09:8368004..8368066 -Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr6chromosomeAt_chr6:54113820..54113882 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A09chromosomeA09:67133011..67133073 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A09chromosomeGhir_A09:71962101..71962163 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A09chromosomeA09:73578759..73578821 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:73730791..73730853 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:70354880..70354942 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A09chromosomeGbar_A09:68158370..68158432 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A09chromosomeA09:69654472..69654534 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017618.1chromosomeCM017618.1:69545218..69545280 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017644.1chromosomeCM017644.1:72470218..72470280 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017696.1chromosomeCM017696.1:69659597..69659659 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A09chromosomeA09:75159239..75159301 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:74206627..74206689 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:77149077..77149139 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_09chromosomeB_09:61021682..61021744 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr06chromosomeChr06:43294830..43294892 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:23980778..23980840 +Gossypium gossypioides (D6) genome ISU_v1n/a
F09chromosomeF09:61991232..61991294 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>USDA_SNP0049 ID=USDA_SNP0049; Name=USDA_SNP0049; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGATTCATCCATTGCCTCCTTGTTTGCAAGATCAAACTGTCTTCTTC
TCCCCCC[A/C]AAAAA