USDA_SNP0039, USDA_SNP0039 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_SNP0039
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i00008Gh
TypeSNP
SNP AllelesC/T
SpeciesGossypium hirsutum
Publication[view all]
ContactStelly, David M.
Gore, Michael A.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr10chromosomeChr10:17037463..17037463 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018220.1chromosomeCM018220.1:17099049..17099111 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:17190802..17190864 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_06chromosomeKI_06:9278759..9278821 +Gossypioides kirkii genome ISU_v3n/a
D10_06chromosomeD10_06:44512612..44512674 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016619.1chromosomeCM016619.1:117265997..117266059 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr11chromosomeDt_chr11:40377919..40377981 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold4099_D06supercontigscaffold4099_D06:131324..131386 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:18031004..18031066 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:17530025..17530087 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:18002460..18002522 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:17527887..17527949 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D06chromosomeGbar_D06:17274851..17274913 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:17003269..17003331 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:17807576..17807638 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:17468695..17468757 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:17293041..17293103 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:18187253..18187315 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:17000192..17000254 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_06chromosomeB_06:71430126..71430188 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr10chromosomeChr10:17841774..17841836 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr10chromosomechr10:14717660..14717722 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_10chromosomeChr_10:13886841..13886903 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:18337425..18337487 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:12373007..12373069 +Gossypium aridum (D4) genome ISU_v1n/a
Chr10chromosomeChr10:10618367..10618429 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr10chromosomeChr10:12964923..12964985 +Gossypium lobatum (D7) genome ISU_v1n/a
E06chromosomeE06:88236129..88236191 -Gossypium stocksii (E1) genome NSF_v1n/a
F06chromosomeF06:31658205..31658267 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr06chromosomeChr06:148708963..148709025 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0039 ID=USDA_SNP0039; Name=USDA_SNP0039; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGAT[C/T]AAACAGTAAAACCAAAAACTTGATCGATTTCAGTAGCT
CAGCTTTTTGACTAAAA