USDA_SNP0027, USDA_SNP0027 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_SNP0027
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i00006Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium hirsutum
Publication[view all]
ContactStelly, David M.
Gore, Michael A.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr07chromosomeChr07:52099647..52099647 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018225.1chromosomeCM018225.1:60039075..60039137 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:8703360..8703421 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_11chromosomeD10_11:58567328..58567390 +Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold165.1supercontigscaffold165.1:511796..511858 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:57962628..57962690 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:62689750..62689812 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:61915543..61915605 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:62663197..62663259 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:59920460..59920522 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D11chromosomeGbar_D11:59483969..59484031 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:62494040..62494102 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:61964739..61964801 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:63464716..63464778 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:59578446..59578508 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:62491493..62491555 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:7010629..7010691 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_11chromosomeB_11:89484898..89484960 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:59570714..59570776 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr07chromosomechr07:43226197..43226259 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_07chromosomeChr_07:40679454..40679516 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:60572491..60572553 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:36649082..36649144 -Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:32057417..32057480 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr07chromosomeChr07:39113316..39113378 -Gossypium lobatum (D7) genome ISU_v1n/a
Sequence
>USDA_SNP0027 ID=USDA_SNP0027; Name=USDA_SNP0027; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGACGATCTTTTGCGATTAATTATGTCTACTGGTCTCTGCAAAAAAA
TATAACAGTA[A/G]CA