USDA_SNP0025, USDA_SNP0025 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0025
dbSNP IDN/A
TypeSNP
SNP AllelesA/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018216.1chromosomeCM018216.1:38033652..38033714 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018204.1chromosomeCM018204.1:44045002..44045064 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:31051596..31051658 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_03chromosomeKI_03:25952698..25952760 +Gossypioides kirkii genome ISU_v3n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:72798551..72798613 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_03chromosomeD10_03:31739457..31739519 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr6chromosomeDt_chr6:29395700..29395762 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr5chromosomeDt_chr5:5274800..5274862 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:38371216..38371278 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A03chromosomeA03:40124856..40124918 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:40183781..40183843 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:40938437..40938499 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:47365091..47365153 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:41648832..41648894 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:45588636..45588698 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:38984913..38984975 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A03chromosomeA03:42054379..42054441 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D02chromosomeGbar_D02:38634754..38634816 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A03chromosomeGbar_A03:43776946..43777008 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:39929768..39929830 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A03chromosomeA03:45052529..45052591 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:40823332..40823394 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017612.1chromosomeCM017612.1:44990741..44990803 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:41682656..41682718 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017638.1chromosomeCM017638.1:47471606..47471668 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:39438277..39438339 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017690.1chromosomeCM017690.1:44900551..44900613 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:39311165..39311227 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D02chromosomeD02:42369701..42369763 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A03chromosomeA03:47812292..47812354 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:63920774..63920836 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:60973371..60973433 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr03chromosomeChr03:32648038..32648100 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_03chromosomeB_03:48434678..48434740 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr05chromosomeChr05:34401792..34401854 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr05chromosomechr05:25369407..25369469 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_05chromosomeChr_05:22434748..22434810 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr05chromosomeChr05:35754792..35754854 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:22778099..22778161 +Gossypium aridum (D4) genome ISU_v1n/a
Chr05chromosomeChr05:19204799..19204861 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr05chromosomeChr05:24083555..24083617 +Gossypium lobatum (D7) genome ISU_v1n/a
F03chromosomeF03:58474435..58474497 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>USDA_SNP0025 ID=USDA_SNP0025; Name=USDA_SNP0025; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGAC[A/T]TTCATCTTCTTTAAGTATTGCATGTGTCAAATGCAAAT
TAGAGAGAACAAATATA