USDA_SNP0024, USDA_SNP0024 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0024
dbSNP IDN/A
TypeSNP
SNP AllelesA/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018204.1chromosomeCM018204.1:26212589..26212651 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
KI_03chromosomeKI_03:11049262..11049324 +Gossypioides kirkii genome ISU_v3n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:49602303..49602365 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016616.1chromosomeCM016616.1:109064687..109064749 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr12chromosomeAt_chr12:89666206..89666268 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:27674384..27674446 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A03chromosomeGhir_A03:27637697..27637759 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:26431505..26431567 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:27197820..27197882 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:26221664..26221726 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A03chromosomeGbar_A03:26273211..26273273 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:26173857..26173919 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:26477268..26477330 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017638.1chromosomeCM017638.1:27392406..27392468 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:26335850..26335912 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:27643823..27643885 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:85999946..86000008 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:83107747..83107809 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_03chromosomeB_03:65521795..65521857 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr05chromosomeChr05:12310871..12310933 +Gossypium gossypioides (D6) genome ISU_v1n/a
E03chromosomeE03:39803197..39803259 +Gossypium stocksii (E1) genome NSF_v1n/a
F03chromosomeF03:31460056..31460118 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr03chromosomeChr03:96238033..96238095 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0024 ID=USDA_SNP0024; Name=USDA_SNP0024; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGACATATCTAGGGCAAGCAATTATTCC[A/T]TTGAGGTAAGTTTG
GATAGTTGAATAAGCTT