USDA_SNP0022, USDA_SNP0022 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_SNP0022
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i00004Gh
TypeSNP
SNP AllelesT/C
SpeciesGossypium hirsutum
Publication[view all]
ContactStelly, David M.
Gore, Michael A.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018220.1chromosomeCM018220.1:12198051..12198113 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018215.1chromosomeCM018215.1:5640164..5640226 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:12121157..12121220 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_01chromosomeD5_01:5370832..5370894 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_13chromosomeD10_13:54153614..54153677 +Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_02chromosomeD10_02:24876989..24877051 +Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_04chromosomeD10_04:4722942..4723004 -Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr2chromosomeAt_chr2:7120514..7120577 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr10chromosomeDt_chr10:18489217..18489279 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:12378762..12378824 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold3718_D01supercontigscaffold3718_D01:33503..33566 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:12930667..12930729 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D01chromosomeGhir_D01:5963726..5963789 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:12556580..12556642 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:5616325..5616388 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:12915516..12915578 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:12431213..12431275 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D01chromosomeD01:5822199..5822262 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D06chromosomeGbar_D06:12350494..12350556 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D01chromosomeGbar_D01:6245908..6245970 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:12138505..12138567 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D01chromosomeD01:6035904..6035966 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:12826660..12826722 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017623.1chromosomeCM017623.1:5788996..5789059 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:12514317..12514379 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017649.1chromosomeCM017649.1:6517146..6517208 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:12397677..12397739 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017701.1chromosomeCM017701.1:5926739..5926801 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:13088225..13088287 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D01chromosomeD01:6078733..6078796 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:11898625..11898688 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr08chromosomeChr08:45442189..45442251 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr06chromosomeChr06:33028872..33028934 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Sequence
>USDA_SNP0022 ID=USDA_SNP0022; Name=USDA_SNP0022; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGACAAAAAAATACCTTGACCAGGTCTTCTCCTTATGTACCGTACCA
CA[C/T]GAAAGGCAGC