USDA_SNP0015, USDA_SNP0015 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0015
dbSNP IDN/A
TypeSNP
SNP AllelesA/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018220.1chromosomeCM018220.1:61725216..61725278 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:59732283..59732345 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
CM016619.1chromosomeCM016619.1:1518311..1518373 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr9chromosomeAt_chr9:84728490..84728552 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:63061270..63061332 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:65685677..65685739 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:64282441..64282503 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:65054830..65054892 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:61990590..61990652 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D06chromosomeGbar_D06:61921657..61921719 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:61743104..61743166 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:62114041..62114103 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:65780128..65780190 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:62258432..62258494 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:65523904..65523966 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:59332290..59332352 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr10chromosomeChr10:61991781..61991841 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr10chromosomechr10:47868566..47868628 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_10chromosomeChr_10:42521508..42521570 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:63593407..63593469 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:34848572..34848634 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr10chromosomeChr10:42352458..42352520 +Gossypium lobatum (D7) genome ISU_v1n/a
E06chromosomeE06:1365500..1365562 -Gossypium stocksii (E1) genome NSF_v1n/a
Chr06chromosomeChr06:1098661..1098723 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0015 ID=USDA_SNP0015; Name=USDA_SNP0015; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGAAGAAAATTATAAAAGAATAAGCTCACAAC[A/T]TTTTAGACAA
GTACCATACATGTTAAG