USDA_SNP0007, USDA_SNP0007 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0007
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018223.1chromosomeCM018223.1:45911182..45911243 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018210.1chromosomeCM018210.1:72068234..72068296 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:79543831..79543893 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_09chromosomeD10_09:4550507..4550566 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016622.1chromosomeCM016622.1:6593092..6593153 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr11chromosomeAt_chr11:7614661..7614723 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold120853supercontigscaffold120853:315..376 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D09chromosomeD09:46041722..46041783 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A09chromosomeA09:70806453..70806515 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:48047730..48047791 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A09chromosomeGhir_A09:76584505..76584567 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:47424022..47424083 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:77998477..77998539 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:47780287..47780348 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:78114089..78114151 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:45879641..45879702 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A09chromosomeA09:74991035..74991097 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A09chromosomeGbar_A09:72685146..72685208 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A09chromosomeA09:74114226..74114288 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017618.1chromosomeCM017618.1:74088808..74088870 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:48304167..48304228 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017644.1chromosomeCM017644.1:77045129..77045191 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:47511604..47511665 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017696.1chromosomeCM017696.1:74215627..74215689 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A09chromosomeA09:79897056..79897118 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:79119651..79119713 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:81872032..81872094 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr09chromosomeChr09:45509909..45509970 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_09chromosomeB_09:65554155..65554216 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr06chromosomeChr06:46210144..46210205 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr06chromosomechr06:38261485..38261546 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_06chromosomeChr_06:32085834..32085893 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06_2991397chromosomeChr06_2991397:1571..1632 +Gossypium aridum (D4) genome ISU_v1n/a
Chr06chromosomeChr06:26788823..26788884 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr06chromosomeChr06:32826290..32826351 +Gossypium lobatum (D7) genome ISU_v1n/a
E09chromosomeE09:6075119..6075180 -Gossypium stocksii (E1) genome NSF_v1n/a
F09chromosomeF09:66152973..66153034 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr09chromosomeChr09:126380486..126380547 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0007 ID=USDA_SNP0007; Name=USDA_SNP0007; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGAAATCAAATCGGA[C/T]AAATGTATGGTGGCGTCAGAGCATCGG
ACTTTTTTAACAGTTGT