USDA_SNP0005, USDA_SNP0005 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0005
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018222.1chromosomeCM018222.1:62974103..62974165 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018209.1chromosomeCM018209.1:116185988..116186050 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:59027494..59027556 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:126451667..126451729 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_08chromosomeD10_08:2384022..2384084 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016621.1chromosomeCM016621.1:3642475..3642537 +Gossypium australe (G2) genome CRI_v1.1n/a
CM016616.1chromosomeCM016616.1:152908540..152908602 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr5chromosomeDt_chr5:12310208..12310270 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:63401555..63401617 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A08chromosomeA08:100719043..100719105 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:65952214..65952276 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A08chromosomeGhir_A08:119689870..119689932 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:66254826..66254888 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:122266619..122266681 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:65798069..65798131 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:122578372..122578434 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:63086020..63086082 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A08chromosomeA08:118271472..118271534 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D08chromosomeGbar_D08:63107586..63107648 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A08chromosomeGbar_A08:116867104..116867166 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:64856616..64856678 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A08chromosomeA08:117819717..117819779 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:64682552..64682614 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017617.1chromosomeCM017617.1:116360359..116360421 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:66791350..66791412 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017643.1chromosomeCM017643.1:126110287..126110349 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:63379643..63379705 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017695.1chromosomeCM017695.1:117109054..117109116 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:66512510..66512572 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A08chromosomeA08:124517391..124517453 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:128994080..128994142 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:129878320..129878382 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr08chromosomeChr08:59927181..59927243 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr04chromosomeChr04:61538737..61538799 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr04chromosomechr04:46447354..46447416 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_04chromosomeChr_04:43782289..43782351 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr04chromosomeChr04:63730770..63730832 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:40815253..40815315 -Gossypium aridum (D4) genome ISU_v1n/a
Chr04chromosomeChr04:34436546..34436608 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr04chromosomeChr04:42020450..42020512 -Gossypium lobatum (D7) genome ISU_v1n/a
E08chromosomeE08:119129499..119129561 -Gossypium stocksii (E1) genome NSF_v1n/a
F08chromosomeF08:101937939..101938001 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr08chromosomeChr08:3775281..3775343 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0005 ID=USDA_SNP0005; Name=USDA_SNP0005; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGAAACCGTCTGAACAGCAGCGACTACTTCAAAAGTTGCC[A/G]AG
AGTGATTGCGGAGGAAG