USDA_SNP0004, USDA_SNP0004 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0004
dbSNP IDN/A
TypeSNP
SNP AllelesA/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018220.1chromosomeCM018220.1:12877503..12877565 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:12803087..12803149 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_06chromosomeD10_06:48688899..48688961 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016619.1chromosomeCM016619.1:121088957..121089019 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr10chromosomeDt_chr10:17793260..17793322 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:13068544..13068606 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:13624388..13624450 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:13222797..13222859 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:13608987..13609049 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:13125257..13125319 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D06chromosomeGbar_D06:13029752..13029814 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:12799762..12799824 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:13512063..13512125 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:13207513..13207575 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:13081507..13081569 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:13782255..13782317 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:12582066..12582128 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr10chromosomeChr10:13230386..13230448 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr10chromosomechr10:11325447..11325509 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_10chromosomeChr_10:10808570..10808632 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:13084449..13084511 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10_6047169chromosomeChr10_6047169:8656..8718 +Gossypium aridum (D4) genome ISU_v1n/a
Chr10chromosomeChr10:8086329..8086391 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr10chromosomeChr10:9784253..9784315 +Gossypium lobatum (D7) genome ISU_v1n/a
E06chromosomeE06:96242235..96242297 -Gossypium stocksii (E1) genome NSF_v1n/a
F06chromosomeF06:16558378..16558440 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>USDA_SNP0004 ID=USDA_SNP0004; Name=USDA_SNP0004; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGAAACCAATCGGCTGCAAACAAACGCGAA[A/T]TGCAGGGGAGAA
TTTTTTCTATTCTTTCA