USDA_SNP0002, USDA_SNP0002 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0002
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018211.1chromosomeCM018211.1:1991149..1991211 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:127389714..127389776 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold26.1supercontigscaffold26.1:1301591..1301653 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A10chromosomeA10:1954694..1954756 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:1694111..1694173 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:2001898..2001960 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:1325007..1325069 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:2122417..2122479 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A10chromosomeGbar_A10:2069654..2069716 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:2036635..2036697 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:2155221..2155283 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017645.1chromosomeCM017645.1:2176870..2176932 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017697.1chromosomeCM017697.1:2029062..2029124 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:2092784..2092846 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:1955403..1955465 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:1947598..1947660 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
F10chromosomeF10:1938227..1938289 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>USDA_SNP0002 ID=USDA_SNP0002; Name=USDA_SNP0002; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGAAAAGACATCATGCATCATCAAGG[A/G]CAATGTGGGGGTTATT
GCCAGGTTGGGGTTGAA