TAMU_GH_TBh120J09r222, TAMU_GH_TBh120J09r222 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh120J09r222
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i47486Gh
TypeSNP
SNP AllelesA/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr09chromosomeChr09:11864870..11864870 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018202.1chromosomeCM018202.1:40774795..40774895 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:29063518..29063618 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_05chromosomeD10_05:48521911..48522010 -Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold457.1supercontigscaffold457.1:167970..168070 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr8chromosomeAt_chr8:3350004..3350103 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A01chromosomeA01:41779931..41780031 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:43279838..43279938 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:42931516..42931616 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:42587311..42587411 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A01chromosomeGbar_A01:41079481..41079581 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:41029118..41029218 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:43030226..43030326 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:44668382..44668482 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:41190173..41190273 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:44013040..44013140 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:56231615..56231715 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:29759188..29759288 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_13chromosomeB_13:21274227..21274326 +Gossypium anomalum (B1) genome NSF_v1n/a
F06chromosomeF06:25273637..25273737 +Gossypium longicalyx (F1) genome NSF_v1n/a
F10chromosomeF10:24941803..24941903 -Gossypium longicalyx (F1) genome NSF_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch01_At.01N/A52.01SNPi47486GhView
23-79 x TM-1, F2 (2015 SNP)AD_ch01_At.01N/A69.05i47486GhView
3Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch01_At.01N/A52.1i47486GhView
Sequence
>TAMU_GH_TBh120J09r222 ID=TAMU_GH_TBh120J09r222; Name=TAMU_GH_TBh120J09r222; organism=Gossypium sp.; type=genetic_marker; length=105bp
ATATCATTCCTTCTAGTCTTATTTCTGTTTTGAATGATAATATTTCTACT
[A/C]CTCATATCAATGATTCTAAAGGATATAAGAATGGGTTTAATGGGT
AAATC