TAMU_GH_TBh111K24r640, TAMU_GH_TBh111K24r640 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh111K24r640
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i46509Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018205.1chromosomeCM018205.1:24883304..24883404 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:56437273..56437373 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:60275452..60275552 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr13chromosomeAt_chr13:7142178..7142278 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold769_A04supercontigscaffold769_A04:10138..10238 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A04chromosomeA04:15701862..15701962 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A04chromosomeGhir_A04:26702289..26702389 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A04chromosomeGhir_A04:22386973..22387073 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
scaffold48441_obj_A04supercontigscaffold48441_obj_A04:3142..3242 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:26207717..26207817 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:25410494..25410594 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:20920865..20920965 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:24625019..24625119 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Scaffold3507_ERROPOS4234955supercontigScaffold3507_ERROPOS4234955:70611..70711 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A04chromosomeA04:24592282..24592382 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017613.1chromosomeCM017613.1:26126167..26126267 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017639.1chromosomeCM017639.1:22971832..22971932 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017639.1chromosomeCM017639.1:36526496..36526596 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017691.1chromosomeCM017691.1:24664786..24664886 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A04chromosomeA04:22224211..22224311 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A04chromosomeA04:27362134..27362234 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:48111824..48111924 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:43040778..43040878 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch04_At.04N/A61.23i46509GhView
2Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch04_At.04N/A39.1i46509GhView
Sequence
>TAMU_GH_TBh111K24r640 ID=TAMU_GH_TBh111K24r640; Name=TAMU_GH_TBh111K24r640; organism=Gossypium sp.; type=genetic_marker; length=105bp
TCGTTATACATTTTCGTACTACCCGGATGCACATATAACCGATTACTATG
[A/G]GCTTCACTCAGAATCATTTGAATTAACTCTGGATTTCTCGGAATA
CAAAT